View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16733_low_22 (Length: 261)
Name: NF16733_low_22
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16733_low_22 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 43255938 - 43255678
Alignment:
| Q |
1 |
aagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcataccctggtggacctat |
100 |
Q |
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| T |
43255938 |
aagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcataccctggtggacctat |
43255839 |
T |
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| Q |
101 |
atttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaagattagctatgttggcaatattgggt |
200 |
Q |
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| T |
43255838 |
atttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaaggttagcaatgttggcaatattgggt |
43255739 |
T |
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| Q |
201 |
tactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttgg |
261 |
Q |
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| T |
43255738 |
tactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttgg |
43255678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 43259204 - 43258944
Alignment:
| Q |
1 |
aagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcataccctggtggacctat |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43259204 |
aagattggtacaatcctggctccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcataccctggtggacctat |
43259105 |
T |
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| Q |
101 |
atttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaagattagctatgttggcaatattgggt |
200 |
Q |
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| T |
43259104 |
atttaaccctcttggttttggtaaagatgagaaatcattgaaggaattaaagctgaaggaagttaagaatggaaggttagcaatgttggcaatattgggt |
43259005 |
T |
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| Q |
201 |
tactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttgg |
261 |
Q |
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| T |
43259004 |
tactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttgg |
43258944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 24 - 261
Target Start/End: Complemental strand, 43247918 - 43247681
Alignment:
| Q |
24 |
atgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcataccctggtggacctatatttaaccctcttggttttggta |
123 |
Q |
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| T |
43247918 |
atgggaaaacaatactttttaggacttgagaaaggtcttggcggttccggtgaaccagcataccctggtggacctatatttaaccctcttggttttggta |
43247819 |
T |
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| Q |
124 |
aagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaagattagctatgttggcaatattgggttactttattcaagctcttgttac |
223 |
Q |
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| T |
43247818 |
aagatgagaaatcattgaaggatttaaagctgaaggaagttaagaatggaaggttagctatgttggcaatattgggttactttgttcaagctctagttac |
43247719 |
T |
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| Q |
224 |
aggagttggaccataccaaaacctcttagatcatttgg |
261 |
Q |
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| T |
43247718 |
aagagttggaccataccaaaacttcttaaatcatttgg |
43247681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 43234059 - 43233989
Alignment:
| Q |
191 |
aatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttgg |
261 |
Q |
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|||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43234059 |
aatactgggtgactttgttcaatctcttgttacaggagttggaccataccaaaacctcttggatcatttgg |
43233989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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