View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16733_low_23 (Length: 253)
Name: NF16733_low_23
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16733_low_23 |
 | |
|
| [»] scaffold0586 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 124 - 243
Target Start/End: Complemental strand, 46886142 - 46886019
Alignment:
| Q |
124 |
tccatatatgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttagaattactgtatattggatgtg----ctctgtttagaat |
219 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| |
|
|
| T |
46886142 |
tccatatatgatattcccaagtgtaaaattttatctaagaaagtgagatttgtcaaatttagaatcactatatattggatgtttgtcctctgtttagaat |
46886043 |
T |
|
| Q |
220 |
gttatatatggtgtaattcctatg |
243 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
46886042 |
gttatatatggtgtaattcctatg |
46886019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 131 - 243
Target Start/End: Original strand, 22902560 - 22902677
Alignment:
| Q |
131 |
atgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttagaattactgtata-ttgga----tgtgctctgtttagaatgttata |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | || ||||| ||||||||||||||||||||||| |
|
|
| T |
22902560 |
atgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttggaatcactatgtatttggatgtttgtgctctgtttagaatgttata |
22902659 |
T |
|
| Q |
226 |
tatggtgtaattcctatg |
243 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22902660 |
tatggtgtaattcctatg |
22902677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 131 - 243
Target Start/End: Original strand, 26662301 - 26662418
Alignment:
| Q |
131 |
atgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttagaattactgtata-ttgga----tgtgctctgtttagaatgttata |
225 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||||| ||||||||||||||||||||||| |
|
|
| T |
26662301 |
atgatatttccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttggaatcactatatatttggatgtttgtgctctgtttagaatgttata |
26662400 |
T |
|
| Q |
226 |
tatggtgtaattcctatg |
243 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
26662401 |
tatggtgtaattcctatg |
26662418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 188
Target Start/End: Original strand, 26661907 - 26662061
Alignment:
| Q |
34 |
taataaccaataagcatgtgttagaactttgattctgaaaattaagtatatagcannnnnnnncttcaacttttatatttcttaatattatccatatatg |
133 |
Q |
| |
|
||||||||||||||| ||||||| |||| | ||| ||||||| ||||||||| || ||||||||||||| | |||||||||||||||| ||| |
|
|
| T |
26661907 |
taataaccaataagcctgtgttataactctaattttgaaaatgaagtatataacatgttcttttttcaacttttatactgcttaatattatccatagatg |
26662006 |
T |
|
| Q |
134 |
atattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttagaat |
188 |
Q |
| |
|
|| ||||||| ||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26662007 |
atgttcccaaatgtgacatattatctaagaaagtgagatttgtcaaatttggaat |
26662061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 26666210 - 26666311
Alignment:
| Q |
98 |
ttcaacttttatatttcttaatattatccatatatgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttagaattactgtata |
197 |
Q |
| |
|
||||||||||||| | |||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
26666210 |
ttcaacttttatactgcttaatattatccatagatgatgttcccaagtgtgacatattatctaagaaagtgagatttgtcaaatttggaatcactatata |
26666309 |
T |
|
| Q |
198 |
tt |
199 |
Q |
| |
|
|| |
|
|
| T |
26666310 |
tt |
26666311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 19702539 - 19702603
Alignment:
| Q |
131 |
atgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttagaattactgta |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| |
|
|
| T |
19702539 |
atgatattcccaagtgtgaaatattatctaagaaagtgaaatttgtcaaatttaaaatcactgta |
19702603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 2997 - 3037
Alignment:
| Q |
203 |
tgtgctctgtttagaatgttatatatggtgtaattcctatg |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2997 |
tgtgctctgtttagaatgttatatatggtgtaattcctatg |
3037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 10638577 - 10638617
Alignment:
| Q |
203 |
tgtgctctgtttagaatgttatatatggtgtaattcctatg |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10638577 |
tgtgctctgtttagaatgttatatatggtgtaattcctatg |
10638617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 32717034 - 32716994
Alignment:
| Q |
203 |
tgtgctctgtttagaatgttatatatggtgtaattcctatg |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32717034 |
tgtgctctgtttagaatgttatatatggtgtaattcctatg |
32716994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University