View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16733_low_25 (Length: 239)
Name: NF16733_low_25
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16733_low_25 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 53557575 - 53557355
Alignment:
| Q |
19 |
agacaaggacctgcttccaatgcttatgtaaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattaggtctcaagtaattt |
118 |
Q |
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| T |
53557575 |
agacaaggacctgcttccaatgcttatgtaaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattaggtctcaagtaattt |
53557476 |
T |
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| Q |
119 |
aaccacctaagtctgcaactctttccacatctcttgagccctgtgaattttttgtaattatcccattaattagtttgcactaatccaagattactattat |
218 |
Q |
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| T |
53557475 |
aaccacctaagtctgcaactctttccacatctcttgagccctgtgaattttttgtaattatcccattaattagtttgcactaaaccaagattactattat |
53557376 |
T |
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| Q |
219 |
aatcaaaatagtttcaagttt |
239 |
Q |
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| T |
53557375 |
aatcaaaatagtttcaagttt |
53557355 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 4685783 - 4685705
Alignment:
| Q |
27 |
acctgcttccaatgcttatgtaaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattagg |
105 |
Q |
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| T |
4685783 |
acctgcttccaatactaatgtaaaggctgcaaataatgttatcttcttcttcggagaaaccaccatgtttgagattagg |
4685705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 47846787 - 47846845
Alignment:
| Q |
47 |
taaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattagg |
105 |
Q |
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| T |
47846787 |
taaaggctgcaaatgatgttgtcttcttcttcggtgaaaccaccgtgcttgatgttagg |
47846845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 153
Target Start/End: Complemental strand, 5113599 - 5113496
Alignment:
| Q |
50 |
aggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattaggtctcaagtaatttaaccacctaagtctgcaactctttccacatc |
149 |
Q |
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| T |
5113599 |
aggctgcaaataatgtcgtcttcttcttcggagaaaccaccatgtttaatatttggtctaagataatttaaccatctaagacgacagcttttcccacatc |
5113500 |
T |
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| Q |
150 |
tctt |
153 |
Q |
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|||| |
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| T |
5113499 |
tctt |
5113496 |
T |
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