View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16733_low_28 (Length: 223)
Name: NF16733_low_28
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16733_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 79 - 210
Target Start/End: Original strand, 1225413 - 1225544
Alignment:
| Q |
79 |
aaggttctttatagggtaaggtttatccaccatttataatcaatattttagtcatatgaatgctaccataaactttttattggcacaactaatgtaaaca |
178 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1225413 |
aaggttctttatagggcaaggtttatccaccatttataatcaatattttagtcatatcaatgctaccataaactttttattggcacaactaatgtaaaca |
1225512 |
T |
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| Q |
179 |
taataatggaaaaagattagtcatggaaactg |
210 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
1225513 |
taataatggaaaaagattagtcatggaaactg |
1225544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 1200548 - 1200420
Alignment:
| Q |
79 |
aaggttctttatagggtaaggtttatccaccatttataatcaatattttagtcatatgaatgctaccataaactttttattggcacaactaatgtaaac- |
177 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
1200548 |
aaggttctttatagggtaaggtttatccaccacttataatcaatattttagtcatat-catgctaccataaattttttattggcacaactaatgtaaaca |
1200450 |
T |
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| Q |
178 |
ataataat-ggaaaaagattagtcatggaa |
206 |
Q |
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|||| ||| ||||||||| ||||||||||| |
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| T |
1200449 |
ataaaaataggaaaaagactagtcatggaa |
1200420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 1225322 - 1225368
Alignment:
| Q |
33 |
ttgaaccgtgttttaacaccacaccataatagatttataatagacta |
79 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1225322 |
ttgaaccgtgttttaacaccacaccataatagatttataatagacta |
1225368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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