View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16733_low_29 (Length: 215)

Name: NF16733_low_29
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16733_low_29
NF16733_low_29
[»] chr2 (7 HSPs)
chr2 (1-52)||(35681985-35682036)
chr2 (158-203)||(35682142-35682187)
chr2 (1-52)||(2165655-2165706)
chr2 (1-47)||(31636066-31636112)
chr2 (1-47)||(27952637-27952683)
chr2 (1-48)||(23457416-23457462)
chr2 (1-43)||(33053199-33053241)
[»] chr3 (3 HSPs)
chr3 (1-47)||(3064051-3064097)
chr3 (1-47)||(365863-365909)
chr3 (11-47)||(43304270-43304306)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-52)||(45923-45974)
[»] chr8 (4 HSPs)
chr8 (1-52)||(22922157-22922208)
chr8 (1-47)||(26377803-26377849)
chr8 (5-47)||(22512360-22512402)
chr8 (1-52)||(23573315-23573365)
[»] chr6 (11 HSPs)
chr6 (1-52)||(30049648-30049699)
chr6 (1-52)||(30051935-30051986)
chr6 (2-47)||(11194398-11194443)
chr6 (1-49)||(3541978-3542026)
chr6 (7-50)||(12881809-12881852)
chr6 (1-52)||(18203215-18203265)
chr6 (5-47)||(22889038-22889080)
chr6 (5-47)||(22910581-22910623)
chr6 (16-52)||(18726879-18726915)
chr6 (1-52)||(12778664-12778715)
chr6 (5-47)||(22873595-22873637)
[»] chr5 (4 HSPs)
chr5 (1-52)||(21845197-21845248)
chr5 (1-43)||(18252199-18252241)
chr5 (18-52)||(21849278-21849312)
chr5 (18-52)||(21857192-21857226)
[»] chr7 (6 HSPs)
chr7 (1-47)||(4303188-4303234)
chr7 (1-46)||(1217473-1217518)
chr7 (1-43)||(11001090-11001132)
chr7 (5-47)||(13882995-13883037)
chr7 (1-46)||(1786455-1786500)
chr7 (1-43)||(8915437-8915479)
[»] chr1 (6 HSPs)
chr1 (1-47)||(13441901-13441947)
chr1 (1-52)||(10927883-10927934)
chr1 (1-51)||(10926975-10927026)
chr1 (1-52)||(23989004-23989055)
chr1 (1-37)||(8966022-8966058)
chr1 (11-47)||(31915329-31915365)
[»] scaffold0054 (1 HSPs)
scaffold0054 (5-47)||(10434-10476)
[»] chr4 (1 HSPs)
chr4 (1-49)||(6659640-6659687)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-43)||(145513-145555)


Alignment Details
Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 35681985 - 35682036
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35681985 cttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 35682036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 35682142 - 35682187
Alignment:
Q  158 agaacattatagtatttatttcagttggagcctcagtttcattcat 203  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  35682142 agaacattatagtatttatttcagtttgagcctcagtttcattcat 35682187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2165655 - 2165706
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 52  Q
    |||||||||||||||||||||||| ||||| |||| ||||||||||||||||    
T  2165655 cttcagaggtggaggagactgatgtaggagagtttccttagtaattttatag 2165706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31636066 - 31636112
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaattt 47  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||    
T  31636066 cttcagaggtggaggagactgatgtaggagggttttattagtaattt 31636112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27952683 - 27952637
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaattt 47  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||||    
T  27952683 cttcagaggtggaggagactgatgtaggagggttttattaataattt 27952637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 23457416 - 23457462
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaatttt 48  Q
    ||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  23457416 cttcagaggtggaggcgactgatgtagga-ggttttcttagtaatttt 23457462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 33053199 - 33053241
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagta 43  Q
    |||||||||||||||||||||||| || ||||||| |||||||    
T  33053199 cttcagaggtggaggagactgatgtagaagggtttccttagta 33053241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3064097 - 3064051
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaattt 47  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  3064097 cttcagaggtggaggagactgatgcaggagggttttgttagtaattt 3064051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 365909 - 365863
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaattt 47  Q
    |||||||||||||||||| |||||||||||| |||| ||||||||||    
T  365909 cttcagaggtggaggagattgatgcaggaggattttattagtaattt 365863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 43304306 - 43304270
Alignment:
Q  11 ggaggagactgatgcaggagggttttcttagtaattt 47  Q
    |||||||||||||||||||||||||| ||||||||||    
T  43304306 ggaggagactgatgcaggagggttttattagtaattt 43304270  T

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Target: scaffold0110 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 45974 - 45923
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 52  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  45974 cttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 45923  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22922208 - 22922157
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 52  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  22922208 cttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 22922157  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 26377803 - 26377849
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaattt 47  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  26377803 cttcaaaggtggaggagactgatgtaggagggttttcttagtaattt 26377849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 22512402 - 22512360
Alignment:
Q  5 agaggtggaggagactgatgcaggagggttttcttagtaattt 47  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  22512402 agaggtggaggagactgatgcaggagagttttattagtaattt 22512360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 23573315 - 23573365
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 52  Q
    |||||||||||||||||||| ||| || |||| |||||||||||||||||||    
T  23573315 cttcagaggtggaggagactaatgtagaaggg-tttcttagtaattttatag 23573365  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 30049648 - 30049699
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 52  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  30049648 cttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 30049699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 30051935 - 30051986
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 52  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  30051935 cttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 30051986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 11194398 - 11194443
Alignment:
Q  2 ttcagaggtggaggagactgatgcaggagggttttcttagtaattt 47  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  11194398 ttcagaggtggaggagactgatgtaggagagttttcttagtaattt 11194443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3541978 - 3542026
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaatttta 49  Q
    |||||||||||||||||||||||| ||||||| || |||||||||||||    
T  3541978 cttcagaggtggaggagactgatgtaggagggcttccttagtaatttta 3542026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 12881809 - 12881852
Alignment:
Q  7 aggtggaggagactgatgcaggagggttttcttagtaattttat 50  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  12881809 aggtggaggagactgatgtaggagggtttccttagtaattttat 12881852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 18203215 - 18203265
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 52  Q
    |||||||||||||||||||||||| ||||||| ||||| |||||||||||||    
T  18203215 cttcagaggtggaggagactgatgtaggaggg-tttctcagtaattttatag 18203265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 22889038 - 22889080
Alignment:
Q  5 agaggtggaggagactgatgcaggagggttttcttagtaattt 47  Q
    ||||||||| |||||||||| ||||||||||||||||||||||    
T  22889038 agaggtggatgagactgatgtaggagggttttcttagtaattt 22889080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 22910581 - 22910623
Alignment:
Q  5 agaggtggaggagactgatgcaggagggttttcttagtaattt 47  Q
    ||||||||| |||||||||| ||||||||||||||||||||||    
T  22910581 agaggtggatgagactgatgtaggagggttttcttagtaattt 22910623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 18726879 - 18726915
Alignment:
Q  16 agactgatgcaggagggttttcttagtaattttatag 52  Q
    ||||||||||||||||||||| |||||||||||||||    
T  18726879 agactgatgcaggagggtttttttagtaattttatag 18726915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12778715 - 12778664
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 52  Q
    |||||||||||||||||||||||| | |||||||||| ||||| || |||||    
T  12778715 cttcagaggtggaggagactgatgtaagagggttttcatagtatttctatag 12778664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 22873595 - 22873637
Alignment:
Q  5 agaggtggaggagactgatgcaggagggttttcttagtaattt 47  Q
    ||||||||| |||||||||| ||||||||||||||| ||||||    
T  22873595 agaggtggatgagactgatgtaggagggttttcttaataattt 22873637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21845248 - 21845197
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 52  Q
    |||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  21845248 cttcagaggtggaacagactgatgcaagagggttttcttagtaattttatag 21845197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18252199 - 18252241
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagta 43  Q
    |||||||||| |||||| ||||||||||||||||| |||||||    
T  18252199 cttcagaggtagaggaggctgatgcaggagggtttccttagta 18252241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 21849312 - 21849278
Alignment:
Q  18 actgatgcaggagggttttcttagtaattttatag 52  Q
    ||||||||| |||||||||||||||||||||||||    
T  21849312 actgatgcacgagggttttcttagtaattttatag 21849278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 21857226 - 21857192
Alignment:
Q  18 actgatgcaggagggttttcttagtaattttatag 52  Q
    ||||||||| |||||||||||||||||||||||||    
T  21857226 actgatgcacgagggttttcttagtaattttatag 21857192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4303188 - 4303234
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaattt 47  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||    
T  4303188 cttcagaggtggaggagactgatgtaggagggttttattagtaattt 4303234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1217518 - 1217473
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaatt 46  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||    
T  1217518 cttcaaaggtggaggagactgatgcaggagggttttattagtaatt 1217473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 11001132 - 11001090
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagta 43  Q
    |||||||||||||||||||||||| |||||||||| |||||||    
T  11001132 cttcagaggtggaggagactgatgtaggagggtttccttagta 11001090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 13883037 - 13882995
Alignment:
Q  5 agaggtggaggagactgatgcaggagggttttcttagtaattt 47  Q
    ||||||||| |||||||||||||||||||||| ||||||||||    
T  13883037 agaggtggacgagactgatgcaggagggttttattagtaattt 13882995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 1786455 - 1786500
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaatt 46  Q
    |||||||||||||||||||| ||| |||| ||||||||||||||||    
T  1786455 cttcagaggtggaggagactcatgtaggaaggttttcttagtaatt 1786500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8915479 - 8915437
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagta 43  Q
    |||||||| ||||||||||||||| |||||||||| |||||||    
T  8915479 cttcagagatggaggagactgatgtaggagggtttccttagta 8915437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13441947 - 13441901
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaattt 47  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||    
T  13441947 cttcagaggtggaggagactgatgcagaagggttttgttagtaattt 13441901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10927883 - 10927934
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 52  Q
    ||||||| ||||||||||||| || |||||||||| ||||||||||||||||    
T  10927883 cttcagaagtggaggagactgttgtaggagggtttccttagtaattttatag 10927934  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 10926975 - 10927026
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttc-ttagtaattttata 51  Q
    |||||||||||||||||||||||| |||| | ||||| ||||||||||||||    
T  10926975 cttcagaggtggaggagactgatgtaggatgattttcattagtaattttata 10927026  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 23989004 - 23989055
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 52  Q
    ||||||||||| |||||||| ||| |||||||||| ||||||||||| ||||    
T  23989004 cttcagaggtgtaggagactaatgtaggagggtttccttagtaatttcatag 23989055  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8966058 - 8966022
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttc 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  8966058 cttcagaggtggaggagactgatgtaggaaggttttc 8966022  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 31915329 - 31915365
Alignment:
Q  11 ggaggagactgatgcaggagggttttcttagtaattt 47  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  31915329 ggaggagactgatgcatgagggttttattagtaattt 31915365  T

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Target: scaffold0054 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 10434 - 10476
Alignment:
Q  5 agaggtggaggagactgatgcaggagggttttcttagtaattt 47  Q
    ||||||||| |||||||||| ||||||||||||||||||||||    
T  10434 agaggtggatgagactgatgtaggagggttttcttagtaattt 10476  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6659687 - 6659640
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagtaatttta 49  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  6659687 cttcagaggtagaggagactgatgtaggaggg-tttcttagtaatttta 6659640  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 145513 - 145555
Alignment:
Q  1 cttcagaggtggaggagactgatgcaggagggttttcttagta 43  Q
    |||| ||||||||||||||||||| ||||||||||| ||||||    
T  145513 cttctgaggtggaggagactgatgtaggagggttttattagta 145555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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