View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16733_low_3 (Length: 562)
Name: NF16733_low_3
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16733_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 17 - 552
Target Start/End: Original strand, 38705954 - 38706489
Alignment:
| Q |
17 |
agtaaccaaatctgcatatttttcctatccctcccttcctccttctttctctttgttgtcctctctgtcttctcaacaattcgttgttctgttcttacct |
116 |
Q |
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| T |
38705954 |
agtaaccaaatctgcatatttttcctatccctcccttcctccttctttctctttgttgtcctctctgtcttctcaacaattcgttgttctgttcttacct |
38706053 |
T |
|
| Q |
117 |
caatgcctctctgtctctcaaacacaaaaactctcatacatagatcgaaacaatacctaatttttgtgtgtatcatttttctgaattttcattctcattg |
216 |
Q |
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| T |
38706054 |
caatgcctctctgtctctcaaacacaaaaactctcatacatagatcgaaacaatacctaatttttgtgtgtatcatttttctgaattttcattctcattg |
38706153 |
T |
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| Q |
217 |
gcttaaaatgatatgattgtgattcttctctcttcttttttgcgggtaaaccttccttcaaaaccctaattatcattctaatctgatatctaaatcacat |
316 |
Q |
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| T |
38706154 |
gcttaaaatgatatgattgtgattcttctctcttcttttttgcgggtaaaccttccttcaaaaccctaattatcattctaatctgatatctaaatcacat |
38706253 |
T |
|
| Q |
317 |
ttctgttgctgaaggtgatattgtttgagacaatgtcctagctgtgaattatggttttaaataaaatgtatattggttaattttatttgctttgaaatta |
416 |
Q |
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| T |
38706254 |
ttctgttgctgaaggtgatattgtttgagacaatgtcctagctgtgaattatggttttaaataaaatgtatattggttaattttatttgctttgaaatta |
38706353 |
T |
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| Q |
417 |
ttttcttatcaacattaattgtttccttcaatggaaaatgttcaatttgatttgtttacattttccactttttgtgtttaatctttggtttaaacggtct |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38706354 |
ttttcttatcaacattaattgtttccttcaatggaaaatgttcaatttgatttgtttacattttccactttttgtgtttaatctttggtttaaacggtct |
38706453 |
T |
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| Q |
517 |
attatgaaacttttgctttttctacagttttttctt |
552 |
Q |
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| T |
38706454 |
attatgaaacttttgctttttctacagttttttctt |
38706489 |
T |
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