View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16733_low_30 (Length: 214)
Name: NF16733_low_30
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16733_low_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 47252685 - 47252459
Alignment:
| Q |
1 |
catctacattttatttttcatatgaattgatattattggaaaggacaattctatggtgcataaatatcttgcctcaagcataagctaatttccagtgttc |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47252685 |
catctacattttatttttcatataaattgatattattagaaaggacaattctatggtgcataaatatcttgcctcaagcataagctaatttccagtgttc |
47252586 |
T |
|
| Q |
101 |
aattaata--------------atcaaatcacaatacattgttattcaatggtagaaaatatacttgtagacaatgcaagaccattttactagtcgatgg |
186 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47252585 |
aattaatagatcttactattaaatcaaatcacaatacattgttattcaatggtagaaaatatacttgtagacaatgcaagaccattttactagtcgatgg |
47252486 |
T |
|
| Q |
187 |
atttttctaactttcatctaatgtatt |
213 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
47252485 |
atttttctaactttcatctaatgtatt |
47252459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University