View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16733_low_31 (Length: 212)

Name: NF16733_low_31
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16733_low_31
NF16733_low_31
[»] chr1 (4 HSPs)
chr1 (17-193)||(43383188-43383364)
chr1 (17-96)||(40949653-40949732)
chr1 (40-96)||(29998621-29998677)
chr1 (142-185)||(29998519-29998562)
[»] chr8 (3 HSPs)
chr8 (19-190)||(10898694-10898865)
chr8 (19-193)||(23159258-23159434)
chr8 (40-92)||(12111727-12111778)
[»] scaffold0038 (1 HSPs)
scaffold0038 (17-96)||(109871-109950)
[»] chr6 (5 HSPs)
chr6 (17-96)||(28318765-28318844)
chr6 (17-96)||(22827094-22827173)
chr6 (40-96)||(16275960-16276016)
chr6 (142-185)||(16275858-16275901)
chr6 (142-185)||(22826991-22827034)
[»] chr3 (5 HSPs)
chr3 (17-96)||(42397251-42397331)
chr3 (17-96)||(32972233-32972312)
chr3 (125-193)||(20930362-20930430)
chr3 (125-185)||(32972131-32972191)
chr3 (142-185)||(42397149-42397192)
[»] chr2 (4 HSPs)
chr2 (17-96)||(39835960-39836039)
chr2 (17-96)||(19044358-19044437)
chr2 (142-185)||(19044496-19044539)
chr2 (142-185)||(39835858-39835901)
[»] scaffold0567 (1 HSPs)
scaffold0567 (21-86)||(1-66)
[»] scaffold0059 (2 HSPs)
scaffold0059 (125-193)||(65106-65174)
scaffold0059 (125-185)||(73211-73271)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 43383364 - 43383188
Alignment:
Q  17 aatatgaacttttttatggaaagaaataatatgaacttaatcaatgctttttatacaccatcaaatcattccttatagagnnnnnnnnnnnngtcttgct 116  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||            ||||| ||    
T  43383364 aatatgaactttttcatggaaagaaataatatgaacttaatcaatgctttttatacaccaccaaatcatttcttatagagaaaaacaaaaaagtcttact 43383265  T
Q  117 ttgaatgatgtttcttatgtgaaacatagacatcgattctactaatttttgttcccttattaaattatagctgctat 193  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||| | || ||||||||||||||||||||    
T  43383264 ttgaatgatatttcttatgtggaacatagacatcgattctactaatttttgctaccatattaaattatagctgctat 43383188  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 40949653 - 40949732
Alignment:
Q  17 aatatgaacttttttatggaaagaaataatatgaacttaatcaatgctttttatacaccatcaaatcattccttatagag 96  Q
    ||||||||| ||||||| |||| ||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||    
T  40949653 aatatgaacctttttatagaaacaaataatatgaacttaatcaatgttttttatacaccaccacatcattccttatagag 40949732  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 29998677 - 29998621
Alignment:
Q  40 aaataatatgaacttaatcaatgctttttatacaccatcaaatcattccttatagag 96  Q
    ||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||    
T  29998677 aaataatatgaacttaatcaatgttttttatacaccaccacatcattccttatagag 29998621  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 29998562 - 29998519
Alignment:
Q  142 atagacatcgattctactaatttttgttcccttattaaattata 185  Q
    |||||||||||||||||||||||||| | |||||||||||||||    
T  29998562 atagacatcgattctactaatttttgcttccttattaaattata 29998519  T

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Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 10898865 - 10898694
Alignment:
Q  19 tatgaacttttttatggaaagaaataatatgaacttaatcaatgctttttatacaccatcaaatcattccttatagagnnnnnnnnnnnngtcttgcttt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||            || |||||||    
T  10898865 tatgaacttttttatggaaagaaataatatgaacttaatcaatgctttttatgcaccaccaaatcattccttatagagaaaaacaaaaatgttttgcttt 10898766  T
Q  119 gaatgatgtttcttatgtgaaacatagacatcgattctactaatttttgttcccttattaaattatagctgc 190  Q
    |||||||||||  || ||| || ||||||||  |||| ||||||||||| ||||||||||||||||||||||    
T  10898765 gaatgatgttttctacgtggaatatagacattcattccactaatttttgctcccttattaaattatagctgc 10898694  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 23159258 - 23159434
Alignment:
Q  19 tatgaacttttttatggaaagaaataatatgaacttaatcaatgctttttatacaccatcaaatcattccttatagagnnnnnnnnnnnngtcttgcttt 118  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||            |  |||||||    
T  23159258 tatgaacttttttttcgaaagaaataatatgaacttaatcaatgctttttatacaccactaaatcattccttatagagaaaactaaaaatgctttgcttt 23159357  T
Q  119 gaatgatgtttc--ttatgtgaaacatagacatcgattctactaatttttgttcccttattaaattatagctgctat 193  Q
    ||  ||||||||   |||||  || |||||||| ||||||||||||||||| ||||||||||||| ||||| |||||    
T  23159358 gacggatgtttcctatatgtagaatatagacattgattctactaatttttgctcccttattaaataatagcagctat 23159434  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 12111727 - 12111778
Alignment:
Q  40 aaataatatgaacttaatcaatgctttttatacaccatcaaatcattccttat 92  Q
    ||||||||||||||||||| |||  ||||| | ||||||||||||||||||||    
T  12111727 aaataatatgaacttaatctatg-attttaaataccatcaaatcattccttat 12111778  T

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Target: scaffold0038 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 109871 - 109950
Alignment:
Q  17 aatatgaacttttttatggaaagaaataatatgaacttaatcaatgctttttatacaccatcaaatcattccttatagag 96  Q
    ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  109871 aatatgaacctttttatagaaacaaataatatgaacttaatcaatgctttttatacaccaccacatcattccttatagag 109950  T

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Target: chr6 (Bit Score: 60; Significance: 9e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 28318765 - 28318844
Alignment:
Q  17 aatatgaacttttttatggaaagaaataatatgaacttaatcaatgctttttatacaccatcaaatcattccttatagag 96  Q
    ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  28318765 aatatgaacctttttatagaaacaaataatatgaacttaatcaatgctttttatacaccaccacatcattccttatagag 28318844  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 22827173 - 22827094
Alignment:
Q  17 aatatgaacttttttatggaaagaaataatatgaacttaatcaatgctttttatacaccatcaaatcattccttatagag 96  Q
    ||||||||| ||||||| |||| ||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||    
T  22827173 aatatgaacctttttatagaaacaaataatatgaacttaatcaatgttttttatacaccaccacatcattccttatagag 22827094  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 16276016 - 16275960
Alignment:
Q  40 aaataatatgaacttaatcaatgctttttatacaccatcaaatcattccttatagag 96  Q
    ||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||    
T  16276016 aaataatatgaacttaatcaatgttttttatacaccaccacatcattccttatagag 16275960  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 16275901 - 16275858
Alignment:
Q  142 atagacatcgattctactaatttttgttcccttattaaattata 185  Q
    |||||||||||||||||||||||||| | |||||||||||||||    
T  16275901 atagacatcgattctactaatttttgcttccttattaaattata 16275858  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 22827034 - 22826991
Alignment:
Q  142 atagacatcgattctactaatttttgttcccttattaaattata 185  Q
    ||||| |||||||||||||||||||| | |||||||||||||||    
T  22827034 atagatatcgattctactaatttttgcttccttattaaattata 22826991  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 42397331 - 42397251
Alignment:
Q  17 aatatgaac-ttttttatggaaagaaataatatgaacttaatcaatgctttttatacaccatcaaatcattccttatagag 96  Q
    ||||||||| |||||||| |||| ||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||    
T  42397331 aatatgaaccttttttatagaaacaaataatatgaacttaatcaatgttttttatacaccaccacatcattccttatagag 42397251  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 32972312 - 32972233
Alignment:
Q  17 aatatgaacttttttatggaaagaaataatatgaacttaatcaatgctttttatacaccatcaaatcattccttatagag 96  Q
    ||||||||| ||||||| |||| |||||||||||||||||||||||  |||||||||||| || ||||||||||||||||    
T  32972312 aatatgaacctttttatagaaacaaataatatgaacttaatcaatgtattttatacaccaccacatcattccttatagag 32972233  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 20930430 - 20930362
Alignment:
Q  125 tgtttcttatgtgaaacatagacatcgattctactaatttttgttcccttattaaattatagctgctat 193  Q
    |||||| ||| ||||| ||| |||||||||||||||||||||| | ||||||||||||||| |||||||    
T  20930430 tgtttcctatctgaaatatacacatcgattctactaatttttgcttccttattaaattataactgctat 20930362  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 32972191 - 32972131
Alignment:
Q  125 tgtttcttatgtgaaacatagacatcgattctactaatttttgttcccttattaaattata 185  Q
    |||||| ||| || || |||||||||||||||||||||||||| | |||||||||||||||    
T  32972191 tgtttcctatctggaaaatagacatcgattctactaatttttgcttccttattaaattata 32972131  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 42397192 - 42397149
Alignment:
Q  142 atagacatcgattctactaatttttgttcccttattaaattata 185  Q
    |||||||||||||||||||||||||| | |||||||||||||||    
T  42397192 atagacatcgattctactaatttttgcttccttattaaattata 42397149  T

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Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 39836039 - 39835960
Alignment:
Q  17 aatatgaacttttttatggaaagaaataatatgaacttaatcaatgctttttatacaccatcaaatcattccttatagag 96  Q
    ||||||||| ||||||| |||| ||||||||||||||||||||||| ||||||||||||| || ||||||||||| ||||    
T  39836039 aatatgaacctttttatagaaacaaataatatgaacttaatcaatgttttttatacaccaccacatcattccttacagag 39835960  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 19044358 - 19044437
Alignment:
Q  17 aatatgaacttttttatggaaagaaataatatgaacttaatcaatgctttttatacaccatcaaatcattccttatagag 96  Q
    ||||||||| ||||||| |||| |||||||||||||||||| |||| |||||||| |||| || ||||||||||||||||    
T  19044358 aatatgaacctttttatagaaacaaataatatgaacttaatgaatgttttttatataccaccacatcattccttatagag 19044437  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 19044496 - 19044539
Alignment:
Q  142 atagacatcgattctactaatttttgttcccttattaaattata 185  Q
    |||||||||||||||||||||||||| | |||||||||||||||    
T  19044496 atagacatcgattctactaatttttgcttccttattaaattata 19044539  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 39835901 - 39835858
Alignment:
Q  142 atagacatcgattctactaatttttgttcccttattaaattata 185  Q
    |||||||||||||||||||||||||| | |||||||||||||||    
T  39835901 atagacatcgattctactaatttttgcttccttattaaattata 39835858  T

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Target: scaffold0567 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 66 - 1
Alignment:
Q  21 tgaacttttttatggaaagaaataatatgaacttaatcaatgctttttatacaccatcaaatcatt 86  Q
    ||||| ||||||| |||| ||||||||||||||||||||||| ||||||||||||| || ||||||    
T  66 tgaacctttttatagaaacaaataatatgaacttaatcaatgttttttatacaccaccacatcatt 1  T

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Target: scaffold0059 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 65106 - 65174
Alignment:
Q  125 tgtttcttatgtgaaacatagacatcgattctactaatttttgttcccttattaaattatagctgctat 193  Q
    |||||| ||| ||||| ||| |||||||||||||||||||||| | ||||||||||||||| |||||||    
T  65106 tgtttcctatctgaaatatacacatcgattctactaatttttgcttccttattaaattataactgctat 65174  T

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Target: scaffold0059; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 73211 - 73271
Alignment:
Q  125 tgtttcttatgtgaaacatagacatcgattctactaatttttgttcccttattaaattata 185  Q
    |||||| ||| ||||| |||||||||||||||||||||||||| | |||||||||||||||    
T  73211 tgtttcctatctgaaatatagacatcgattctactaatttttgcttccttattaaattata 73271  T

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