View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16733_low_4 (Length: 520)
Name: NF16733_low_4
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16733_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 56 - 503
Target Start/End: Original strand, 10239282 - 10239729
Alignment:
| Q |
56 |
cctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtgtaa |
155 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10239282 |
cctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggcctattgtttggatatcaccgtttggtgtaa |
10239381 |
T |
|
| Q |
156 |
ctttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggatt |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239382 |
ctttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggatt |
10239481 |
T |
|
| Q |
256 |
atactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggtaa |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239482 |
atactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggtaa |
10239581 |
T |
|
| Q |
356 |
ccagcttcgttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtcac |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239582 |
ccagcttcgttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtcac |
10239681 |
T |
|
| Q |
456 |
cgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtc |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239682 |
cgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtc |
10239729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 58 - 503
Target Start/End: Original strand, 10230504 - 10230949
Alignment:
| Q |
58 |
tgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtgtaact |
157 |
Q |
| |
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|||||| ||||| ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| | | |
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| T |
10230504 |
tgtgtcagagtctattttaggatgcgccgtcatactcatcaagagtttgccgttgaaatcataacggcccattgtttggatgtcaccgtttggtgttagt |
10230603 |
T |
|
| Q |
158 |
ttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggattat |
257 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||| ||| |||| |
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| T |
10230604 |
ttgacttcataaggaagatctgattctcctaaagcaaaaagacggttaccaaacagagctaaacttgtgttgaccaatccaatgccgttagatgggttat |
10230703 |
T |
|
| Q |
258 |
actgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggtaacc |
357 |
Q |
| |
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||||||| |||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| ||| |
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| T |
10230704 |
actgaccggttaacacccgtgctacaaccacggatccacgtgccgctaaagcaataagcgagttgaaaccagaaaacacgtttgggataagttggtgacc |
10230803 |
T |
|
| Q |
358 |
agcttcgttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtcaccg |
457 |
Q |
| |
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||||| |||||| |||||||| || ||||||| || ||||||||||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||| |
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| T |
10230804 |
agctttgttttcaattttgtacttgtaggtttttacataacggctacatagtgtggctttcccgtttgagattgtaatggcatgaagcatgccgtcaccg |
10230903 |
T |
|
| Q |
458 |
tcaaagagatggtaaggtccacgtggaaggaactgagggtttggtc |
503 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
10230904 |
tcaaagagatggtagggtccacgtggaaggaactgtgggtttggtc |
10230949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 56 - 503
Target Start/End: Complemental strand, 10255323 - 10254876
Alignment:
| Q |
56 |
cctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtgtaa |
155 |
Q |
| |
|
||||||||| ||||||||| ||||| || |||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
10255323 |
cctgtgtcgccgtcaattttcggatgtgcagtcatactcatggagagtttaccgttaaaatcataacggccaattgtttggatatcaccgtttggcgtaa |
10255224 |
T |
|
| Q |
156 |
ctttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggatt |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| || |||||||||||| ||||| |
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| T |
10255223 |
gattgatttcataaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtgttggctaaaccaatgccgttagaaggatt |
10255124 |
T |
|
| Q |
256 |
atactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggtaa |
355 |
Q |
| |
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|| || |||| || ||||||||| | | || || |||||||| || || | |||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
10255123 |
gtattgtccagatatgacacgtgctgcggtgacagagccacgtgcagcagaagctataagcgagttgaaaccagaaaacacgtttgggataagttggtaa |
10255024 |
T |
|
| Q |
356 |
ccagcttcgttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtcac |
455 |
Q |
| |
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|||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||| |||| ||| || ||||||||||| |||| |
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| T |
10255023 |
ccagcttcgttttcgattttgtatttgtaagtttgaacgtaacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccatcac |
10254924 |
T |
|
| Q |
456 |
cgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtc |
503 |
Q |
| |
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|||| ||||| ||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
10254923 |
cgtcgaagaggtggtagggtccacgtggaaggaactgtgggtttggtc |
10254876 |
T |
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