View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16733_low_8 (Length: 421)
Name: NF16733_low_8
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16733_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 13471059 - 13471388
Alignment:
| Q |
18 |
atttgtgtgacaaatgtaagcagtagagtagagtgtagcataggagcatggggcagagaaagtatcaagttaagagaggttaaatgaaagagttaggatt |
117 |
Q |
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| T |
13471059 |
atttgtgtgaaaaatgtaagcagtagagtagagtatagaataggagcatggggcagagaaagtatcaagttaagagaggttaaatgagagagttaggatt |
13471158 |
T |
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| Q |
118 |
gtaggaactattccataatagagatagagacagagcagagagggtagcatgcatgcatgcttatcgattttcaccaccatatcctttggaagattattat |
217 |
Q |
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| T |
13471159 |
ggaggaactattccataatag------agacagagcagagatggtagcatgcatgcatgcttatcgattttcaccaccatatcctttggaagattattat |
13471252 |
T |
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| Q |
218 |
ttatatgaaattatgtatcaaaaacggcttcatcaccagtatcatcagttgacagatttctgattcaggcatattatggtatgtagctatctac-aagag |
316 |
Q |
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| T |
13471253 |
ttatatgaaattatgtatcaaaaacggcttcatcaccagtatcatcagttgacagatttctgattcaggcatattatggtatgtagctatctacaaagag |
13471352 |
T |
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| Q |
317 |
agaaactatagaaaggacaaaatttagttatttata |
352 |
Q |
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| T |
13471353 |
agaaactatagaaaggacaaaatttagttatttata |
13471388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 370 - 408
Target Start/End: Original strand, 13471407 - 13471445
Alignment:
| Q |
370 |
catgacatttggattgagtcaagtagtcaaccctatgtt |
408 |
Q |
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| T |
13471407 |
catgacatttggattgagtcaagtagtcaaccctatgtt |
13471445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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