View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16733_low_9 (Length: 400)
Name: NF16733_low_9
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16733_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 114 - 342
Target Start/End: Original strand, 8169775 - 8170003
Alignment:
| Q |
114 |
caaaatgacatcaacagaacaggattggtcgattggaatattttcaattgaagaaggaatgaaaaggatataaagaaagggaatggactgacaatgacaa |
213 |
Q |
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| T |
8169775 |
caaaatgacatcaacagaacatgattggtcgattggaatattttcaactgaagaaggaatgaaaaggatataaagaaagggaatggactgacaatgacaa |
8169874 |
T |
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| Q |
214 |
tgggtatatgaattatcgaagaactattttcggagaagtggaaaatcatacttgttttcatttagaagttggatcgatgacatatctgatgggtttcagc |
313 |
Q |
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| T |
8169875 |
tgggtatatgaattatcgaagaactattttcggagaagtggaaaatcatacttgttttcagttagaagttggatcggtgacatatctgatgggtttcagc |
8169974 |
T |
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| Q |
314 |
caagaagattgtagagggagaacgttttt |
342 |
Q |
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| T |
8169975 |
caagaagattgtagagggagaactttttt |
8170003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 8167885 - 8167941
Alignment:
| Q |
17 |
cataggctatgtacaacataagagatatttgttattatattttaatggtaaaactta |
73 |
Q |
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| T |
8167885 |
cataggctatgtacaacataagagatatttgttattatattttaatggtaaaactta |
8167941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 8169658 - 8169709
Alignment:
| Q |
64 |
gtaaaacttatctaaggtgagtataacttcactttaaccaaagcaagctgca |
115 |
Q |
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| T |
8169658 |
gtaaaacttatctaaggtgagtataacttcactttaaccaaagcaagctgca |
8169709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 370
Target Start/End: Original strand, 8172461 - 8172491
Alignment:
| Q |
340 |
tttatattcccgtcaatatttctatgtacaa |
370 |
Q |
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| T |
8172461 |
tttatattcccgtcaatatttctatgtacaa |
8172491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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