View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16734_high_3 (Length: 358)

Name: NF16734_high_3
Description: NF16734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16734_high_3
NF16734_high_3
[»] chr5 (7 HSPs)
chr5 (1-103)||(4719733-4719835)
chr5 (44-103)||(11148632-11148691)
chr5 (46-102)||(5769144-5769200)
chr5 (1-33)||(8097334-8097366)
chr5 (50-106)||(42475556-42475612)
chr5 (1-31)||(2972406-2972436)
chr5 (46-104)||(8687018-8687076)
[»] chr4 (14 HSPs)
chr4 (1-106)||(19232018-19232122)
chr4 (44-102)||(24045919-24045977)
chr4 (1-101)||(40693513-40693613)
chr4 (1-34)||(24045325-24045358)
chr4 (1-31)||(37997336-37997366)
chr4 (1-31)||(39654906-39654936)
chr4 (1-30)||(11672083-11672112)
chr4 (4-33)||(35897786-35897815)
chr4 (46-107)||(44539861-44539922)
chr4 (1-33)||(10474069-10474101)
chr4 (1-33)||(14113570-14113602)
chr4 (56-104)||(35936103-35936151)
chr4 (46-102)||(39440611-39440667)
chr4 (1-33)||(52204933-52204965)
[»] chr1 (9 HSPs)
chr1 (44-104)||(3672437-3672497)
chr1 (46-106)||(2269456-2269516)
chr1 (46-104)||(9566846-9566904)
chr1 (46-104)||(21401525-21401583)
chr1 (1-33)||(15083007-15083039)
chr1 (65-105)||(34974722-34974762)
chr1 (1-33)||(47721491-47721523)
chr1 (1-33)||(47728483-47728515)
chr1 (289-329)||(47783614-47783654)
[»] chr3 (9 HSPs)
chr3 (1-99)||(39629729-39629827)
chr3 (46-102)||(14226593-14226649)
chr3 (1-31)||(6178384-6178414)
chr3 (1-31)||(35299833-35299863)
chr3 (1-31)||(42358597-42358627)
chr3 (2-31)||(3518566-3518595)
chr3 (46-107)||(52326146-52326207)
chr3 (46-106)||(44383316-44383376)
chr3 (1-33)||(55361190-55361222)
[»] chr8 (3 HSPs)
chr8 (1-33)||(10731628-10731660)
chr8 (1-30)||(39856120-39856149)
chr8 (1-33)||(44064440-44064472)
[»] chr7 (8 HSPs)
chr7 (46-103)||(41189428-41189487)
chr7 (1-31)||(30941472-30941502)
chr7 (63-104)||(6522159-6522200)
chr7 (1-34)||(10700141-10700174)
chr7 (46-103)||(24614203-24614260)
chr7 (1-29)||(31445400-31445428)
chr7 (1-29)||(32952411-32952439)
chr7 (1-33)||(35207583-35207615)
[»] chr6 (5 HSPs)
chr6 (1-31)||(22079522-22079552)
chr6 (1-30)||(277073-277102)
chr6 (1-30)||(3853267-3853296)
chr6 (1-106)||(4820449-4820554)
chr6 (2-31)||(13689953-13689982)
[»] chr2 (5 HSPs)
chr2 (251-312)||(11922084-11922145)
chr2 (77-106)||(13766188-13766217)
chr2 (276-348)||(28857182-28857255)
chr2 (1-30)||(37737931-37737960)
chr2 (1-29)||(19642680-19642708)


Alignment Details
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 4719733 - 4719835
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatactttcnnnnnnnngcaaaattttgattgtactaaaagttatcacataattgattgttcaaataacacaac 100  Q
    |||||||||||||||||||||||| ||||||||||        |||||||||||  ||||||||||||| ||||||||||| |||||||||||||| |||    
T  4719733 ctctctattgctttgatttttgtgccaatactttcttttctttgcaaaattttggatgtactaaaagttgtcacataattggttgttcaaataacataac 4719832  T
Q  101 tct 103  Q
    |||    
T  4719833 tct 4719835  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 11148632 - 11148691
Alignment:
Q  44 gcaaaattttgattgtactaaaagttatcacataattgattgttcaaataacacaactct 103  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  11148632 gcaaaattttaattgtactaaaagttatcacataattggttgttcaaataatacaactct 11148691  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 5769200 - 5769144
Alignment:
Q  46 aaaattttgattgtactaaaagttatcacataattgattgttcaaataacacaactc 102  Q
    ||||||||||||||| ||||| || | ||||||||||||||||||||||||||||||    
T  5769200 aaaattttgattgtattaaaatttgttacataattgattgttcaaataacacaactc 5769144  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 8097334 - 8097366
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatactt 33  Q
    |||||||||||||||||||||||||||||||||    
T  8097334 ctctctattgctttgatttttgtgtcaatactt 8097366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 42475612 - 42475556
Alignment:
Q  50 ttttgattgtactaaaagttatcacataattgattgttcaaataacacaactcttaa 106  Q
    |||||||||| | | || ||||||||||| || ||||||||||||||||||||||||    
T  42475612 ttttgattgtcccataaattatcacataaatggttgttcaaataacacaactcttaa 42475556  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 2972406 - 2972436
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatac 31  Q
    |||||||||||||||||||||||||||||||    
T  2972406 ctctctattgctttgatttttgtgtcaatac 2972436  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 8687018 - 8687076
Alignment:
Q  46 aaaattttgattgtactaaaagttatcacataattgattgttcaaataacacaactctt 104  Q
    ||||||||||||||  |||||||| |||||||  ||| |||||||||||||| ||||||    
T  8687018 aaaattttgattgttataaaagttgtcacatatatgaatgttcaaataacactactctt 8687076  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 19232122 - 19232018
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatactttcnnnnnnnngcaaaattttgattgtactaaaagttatcacataattgattgttcaaataacacaac 100  Q
    |||||||||||||||||||||||| |||||||||         ||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||    
T  19232122 ctctctattgctttgatttttgtgccaatacttt-ttttctttgcaaaattttggttgtactaaaaattgtcacataattggttgttcaaataacacaac 19232024  T
Q  101 tcttaa 106  Q
    ||||||    
T  19232023 tcttaa 19232018  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 24045919 - 24045977
Alignment:
Q  44 gcaaaattttgattgtactaaaagttatcacataattgattgttcaaataacacaactc 102  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  24045919 gcaaaattttgattgtactaaaagttgtcacataattggttgttcaaataacacaactc 24045977  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 40693613 - 40693513
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatactttcnnnnnnnngcaaaattttgattgtactaaaagttatcacataattgattgttcaaataacacaac 100  Q
    |||||||||||||| ||||||||| |||||| |||        ||||||||||   ||||||||||||| ||||||||||  ||||||||||||||||||    
T  40693613 ctctctattgctttaatttttgtgccaatacattcttttctttgcaaaattttagatgtactaaaagttgtcacataatttgttgttcaaataacacaac 40693514  T
Q  101 t 101  Q
    |    
T  40693513 t 40693513  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 24045325 - 24045358
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatacttt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  24045325 ctctctattgctttgatttttgtgtcaatacttt 24045358  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 37997336 - 37997366
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatac 31  Q
    |||||||||||||||||||||||||||||||    
T  37997336 ctctctattgctttgatttttgtgtcaatac 37997366  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 39654906 - 39654936
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatac 31  Q
    |||||||||||||||||||||||||||||||    
T  39654906 ctctctattgctttgatttttgtgtcaatac 39654936  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 11672112 - 11672083
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaata 30  Q
    ||||||||||||||||||||||||||||||    
T  11672112 ctctctattgctttgatttttgtgtcaata 11672083  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 35897786 - 35897815
Alignment:
Q  4 tctattgctttgatttttgtgtcaatactt 33  Q
    ||||||||||||||||||||||||||||||    
T  35897786 tctattgctttgatttttgtgtcaatactt 35897815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 44539861 - 44539922
Alignment:
Q  46 aaaattttgattgtactaaaagttatcacataattgattgttcaaataacacaactcttaat 107  Q
    ||||||||| ||||   ||||||| |||||||  ||| ||||||||||||||||||||||||    
T  44539861 aaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactcttaat 44539922  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 10474101 - 10474069
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatactt 33  Q
    ||||||||| |||||||||||||||||||||||    
T  10474101 ctctctattactttgatttttgtgtcaatactt 10474069  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 14113602 - 14113570
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatactt 33  Q
    |||||||||||||||||||| ||||||||||||    
T  14113602 ctctctattgctttgattttcgtgtcaatactt 14113570  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 35936103 - 35936151
Alignment:
Q  56 ttgtactaaaagttatcacataattgattgttcaaataacacaactctt 104  Q
    |||| ||||||||| ||||| || ||||||||||||||||||| |||||    
T  35936103 ttgtcctaaaagttgtcacacaaatgattgttcaaataacacacctctt 35936151  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 39440611 - 39440667
Alignment:
Q  46 aaaattttgattgtactaaaagttatcacataattgattgttcaaataacacaactc 102  Q
    ||||||||||||||   ||||||| |||||||  ||| |||||||||||||||||||    
T  39440611 aaaattttgattgtcacaaaagttgtcacatatatgaatgttcaaataacacaactc 39440667  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 52204933 - 52204965
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatactt 33  Q
    ||||||||||||||||||||||||||| |||||    
T  52204933 ctctctattgctttgatttttgtgtcactactt 52204965  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 3672437 - 3672497
Alignment:
Q  44 gcaaaattttgattgtactaaaagttatcacataattgattgttcaaataacacaactctt 104  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  3672437 gcaaaattttggttgtactaaaagttgtcacataattggttgtttaaataacacaactctt 3672497  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 2269516 - 2269456
Alignment:
Q  46 aaaattttgattgtactaaaagttatcacataattgattgttcaaataacacaactcttaa 106  Q
    ||||||||| |||||  ||||||| ||| |||||||| | |||||||||||||||||||||    
T  2269516 aaaattttggttgtatcaaaagttgtcatataattgaatattcaaataacacaactcttaa 2269456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 9566904 - 9566846
Alignment:
Q  46 aaaattttgattgtactaaaagttatcacataattgattgttcaaataacacaactctt 104  Q
    ||||||||| ||||   ||||||| ||| |||||||| |||||||||||||||||||||    
T  9566904 aaaattttggttgtctcaaaagttgtcatataattgaatgttcaaataacacaactctt 9566846  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 21401525 - 21401583
Alignment:
Q  46 aaaattttgattgtactaaaagttatcacataattgattgttcaaataacacaactctt 104  Q
    ||||||||||||||   ||||||| |||||||| ||  |||||||||||||||||||||    
T  21401525 aaaattttgattgtttcaaaagttgtcacataaatggatgttcaaataacacaactctt 21401583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15083039 - 15083007
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatactt 33  Q
    ||||||||||||||| |||||||||||||||||    
T  15083039 ctctctattgctttggtttttgtgtcaatactt 15083007  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 34974762 - 34974722
Alignment:
Q  65 aagttatcacataattgattgttcaaataacacaactctta 105  Q
    ||||| |||||||| ||||||||||||||||||| ||||||    
T  34974762 aagttgtcacataaatgattgttcaaataacacacctctta 34974722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 47721491 - 47721523
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatactt 33  Q
    |||||||||||||||||||| ||||||||||||    
T  47721491 ctctctattgctttgattttcgtgtcaatactt 47721523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 47728483 - 47728515
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatactt 33  Q
    |||||||||||||||||||| ||||||||||||    
T  47728483 ctctctattgctttgattttcgtgtcaatactt 47728515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 329
Target Start/End: Original strand, 47783614 - 47783654
Alignment:
Q  289 taaatgggtctcacgtgtacacataagttgtttatattttt 329  Q
    |||||||||||||||||||||||| | ||||||||| ||||    
T  47783614 taaatgggtctcacgtgtacacatcatttgtttataatttt 47783654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 39629827 - 39629729
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatactttcnnnnnnnngcaaaattttgattgtactaaaagttatcacataattgattgttcaaataacacaa 99  Q
    |||||||||| |||||||||| |||||||| ||||          ||||||||| || ||||||||||| |||||||||||||||||||||||||||||    
T  39629827 ctctctattgttttgatttttatgtcaataatttcttttctttataaaattttggttatactaaaagttgtcacataattgattgttcaaataacacaa 39629729  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 14226649 - 14226593
Alignment:
Q  46 aaaattttgattgtactaaaagttatcacataattgattgttcaaataacacaactc 102  Q
    ||||||||||||||  ||||| || | ||||||||||||||||||||||||||||||    
T  14226649 aaaattttgattgtcttaaaaattgttacataattgattgttcaaataacacaactc 14226593  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 6178414 - 6178384
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatac 31  Q
    |||||||||||||||||||||||||||||||    
T  6178414 ctctctattgctttgatttttgtgtcaatac 6178384  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 35299863 - 35299833
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatac 31  Q
    |||||||||||||||||||||||||||||||    
T  35299863 ctctctattgctttgatttttgtgtcaatac 35299833  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 42358627 - 42358597
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatac 31  Q
    |||||||||||||||||||||||||||||||    
T  42358627 ctctctattgctttgatttttgtgtcaatac 42358597  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 3518595 - 3518566
Alignment:
Q  2 tctctattgctttgatttttgtgtcaatac 31  Q
    ||||||||||||||||||||||||||||||    
T  3518595 tctctattgctttgatttttgtgtcaatac 3518566  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 52326146 - 52326207
Alignment:
Q  46 aaaattttgattgtactaaaagttatcacataattgattgttcaaataacacaactcttaat 107  Q
    ||||||||||||||  |||||||| ||| |||  ||  ||||||||||||||||||||||||    
T  52326146 aaaattttgattgtcataaaagttgtcatatatatggatgttcaaataacacaactcttaat 52326207  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 44383316 - 44383376
Alignment:
Q  46 aaaattttgattgtactaaaagttatcacataattgattgttcaaataacacaactcttaa 106  Q
    ||||||||||||||   ||||||| ||| |||| ||  |||||||||||||||||||||||    
T  44383316 aaaattttgattgtctcaaaagttgtcatataaatggatgttcaaataacacaactcttaa 44383376  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 55361222 - 55361190
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatactt 33  Q
    ||||||||||||||| |||||||||||||||||    
T  55361222 ctctctattgctttggtttttgtgtcaatactt 55361190  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 10731628 - 10731660
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatactt 33  Q
    |||||||||||||||||||||||||||||||||    
T  10731628 ctctctattgctttgatttttgtgtcaatactt 10731660  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 39856120 - 39856149
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaata 30  Q
    ||||||||||||||||||||||||||||||    
T  39856120 ctctctattgctttgatttttgtgtcaata 39856149  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44064440 - 44064472
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatactt 33  Q
    |||||||||||||||||||||||||||| ||||    
T  44064440 ctctctattgctttgatttttgtgtcaagactt 44064472  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 41189487 - 41189428
Alignment:
Q  46 aaaattttgattgtactaaaagttatcacata-at-tgattgttcaaataacacaactct 103  Q
    ||||||||||||||  |||||||||||||||| || ||| ||||||||||||||||||||    
T  41189487 aaaattttgattgtcataaaagttatcacatatatatgaatgttcaaataacacaactct 41189428  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 30941472 - 30941502
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatac 31  Q
    |||||||||||||||||||||||||||||||    
T  30941472 ctctctattgctttgatttttgtgtcaatac 30941502  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 6522200 - 6522159
Alignment:
Q  63 aaaagttatcacataattgattgttcaaataacacaactctt 104  Q
    |||| |||||| |||| |||||||||||||||||||||||||    
T  6522200 aaaaattatcatataaatgattgttcaaataacacaactctt 6522159  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 10700174 - 10700141
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatacttt 34  Q
    |||||||||||||||||||||||||||| |||||    
T  10700174 ctctctattgctttgatttttgtgtcaagacttt 10700141  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 24614260 - 24614203
Alignment:
Q  46 aaaattttgattgtactaaaagttatcacataattgattgttcaaataacacaactct 103  Q
    |||||||||||| |   |||||||||||||||  ||| ||||||||||||||||||||    
T  24614260 aaaattttgattatcacaaaagttatcacatatatgaatgttcaaataacacaactct 24614203  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 31445400 - 31445428
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaat 29  Q
    |||||||||||||||||||||||||||||    
T  31445400 ctctctattgctttgatttttgtgtcaat 31445428  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 32952439 - 32952411
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaat 29  Q
    |||||||||||||||||||||||||||||    
T  32952439 ctctctattgctttgatttttgtgtcaat 32952411  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35207583 - 35207615
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatactt 33  Q
    ||||||||||||||||| |||||||||||||||    
T  35207583 ctctctattgctttgatatttgtgtcaatactt 35207615  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 22079552 - 22079522
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatac 31  Q
    |||||||||||||||||||||||||||||||    
T  22079552 ctctctattgctttgatttttgtgtcaatac 22079522  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 277073 - 277102
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaata 30  Q
    ||||||||||||||||||||||||||||||    
T  277073 ctctctattgctttgatttttgtgtcaata 277102  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 3853296 - 3853267
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaata 30  Q
    ||||||||||||||||||||||||||||||    
T  3853296 ctctctattgctttgatttttgtgtcaata 3853267  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 4820449 - 4820554
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaatactttcnnnnnnnngcaaaattttgattgtactaaaagttatcacataattgattgttcaaataacacaac 100  Q
    ||||||||||||||||||||||||||||| | |          | ||||||||||||||   |||||||||||  ||| |  ||||||||||||||||||    
T  4820449 ctctctattgctttgatttttgtgtcaatgcctcattttctttgtaaaattttgattgtctcaaaagttatcatgtaaatagttgttcaaataacacaac 4820548  T
Q  101 tcttaa 106  Q
    ||||||    
T  4820549 tcttaa 4820554  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 13689982 - 13689953
Alignment:
Q  2 tctctattgctttgatttttgtgtcaatac 31  Q
    ||||||||||||||||||||||||||||||    
T  13689982 tctctattgctttgatttttgtgtcaatac 13689953  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 11922145 - 11922084
Alignment:
Q  251 aagagcatctataatgtagaaactaattttttagtacataaatgggtctcacgtgtacacat 312  Q
    ||||||||| | |||| ||| ||| |||||| | ||| ||||||||||||||||||||||||    
T  11922145 aagagcatccacaatggagacactcatttttaattacttaaatgggtctcacgtgtacacat 11922084  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 106
Target Start/End: Complemental strand, 13766217 - 13766188
Alignment:
Q  77 aattgattgttcaaataacacaactcttaa 106  Q
    ||||||||||||||||||||||||||||||    
T  13766217 aattgattgttcaaataacacaactcttaa 13766188  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 28857255 - 28857182
Alignment:
Q  276 attttttagtacataaatgggtctcacgtgtacacataagttgtttat-atttttcagtagtaatacataataa 348  Q
    ||||||| |||| ||||||||||| || | ||||||||| || ||||| |||||| ||||||||||| ||||||    
T  28857255 attttttggtacttaaatgggtcttacttatacacataatttatttataattttttagtagtaatacttaataa 28857182  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 37737960 - 37737931
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaata 30  Q
    ||||||||||||||||||||||||||||||    
T  37737960 ctctctattgctttgatttttgtgtcaata 37737931  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 19642680 - 19642708
Alignment:
Q  1 ctctctattgctttgatttttgtgtcaat 29  Q
    |||||||||||||||||||||||||||||    
T  19642680 ctctctattgctttgatttttgtgtcaat 19642708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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