View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16734_low_2 (Length: 363)
Name: NF16734_low_2
Description: NF16734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16734_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 351
Target Start/End: Original strand, 47063559 - 47063891
Alignment:
| Q |
20 |
ggcttcaccctatatctgccaagaaagctcaccttgatggaaccacagcttatgcagtttctttgcttttgcacattctgacactgttcgcacatgctca |
119 |
Q |
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| T |
47063559 |
ggcttcaccctatatctgccaagaaagctcaccttgatggaaccacagcctatgcagtttctttgcttttgcacattctgacactgttcgcacatgctca |
47063658 |
T |
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| Q |
120 |
agcacaaatatgtctgcttattttcttctttactactatattttttgggttattctttacctcctcttacaaaatgtccttaatgcaaatcatttacagg |
219 |
Q |
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| T |
47063659 |
agcacaaatatgcctgcttattttcttctttactactatattttttgggttattctttacctcctcttacaaaatgtccttaatgtaaatcatttacagg |
47063758 |
T |
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| Q |
220 |
gtatttccaaagcactctttcct-tcgtagctgatttggtatggtactctcgatgtttgagttttttgttttgcattttgagtaattacattatcggaat |
318 |
Q |
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| T |
47063759 |
gtatttccaaagcactctttcctaccgtagctgatttggtctggtactctcgatgtttgatttttttgttttgcattttgagtaattacattgtcggaat |
47063858 |
T |
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| Q |
319 |
ggactctactcttttcctaactctgcctgcttc |
351 |
Q |
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| T |
47063859 |
ggaccctactcttttcctaactctgcctgcttc |
47063891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 159 - 351
Target Start/End: Original strand, 47062015 - 47062206
Alignment:
| Q |
159 |
attttttgggttattcttt-acctcctcttacaaaatgtccttaatgcaaatcatttacagggtatttccaaagcactctttccttc-gtagctgatttg |
256 |
Q |
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| T |
47062015 |
attttttgggttatttttttacctcctattacagaatgtccttg-tgcaaattgttttcagggaatttccaaagcactctttcctaccgtagctgatttg |
47062113 |
T |
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| Q |
257 |
gtatggtactctcgatgtttgagttttttgttttgcattttgagtaattacattatcggaatggactctactcttttcctaactctgcctgcttc |
351 |
Q |
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| T |
47062114 |
gtatggtactctc--tgtttgagttttttgttttgcattttgagtaattacattgttggaatggactcttttcttttcctaactctgcctgcttc |
47062206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 47053678 - 47053739
Alignment:
| Q |
20 |
ggcttcaccctatatctgccaagaaagctcaccttgatggaaccacagcttatgcagtttct |
81 |
Q |
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| T |
47053678 |
ggcttcaccctatagctgccaagaaagttcacattgatggaactacagcctatgcagtttct |
47053739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 47061870 - 47061931
Alignment:
| Q |
20 |
ggcttcaccctatatctgccaagaaagctcaccttgatggaaccacagcttatgcagtttct |
81 |
Q |
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|||||||||||||| ||||||||||| ||| || ||||||||||||| |||||||||||| |
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| T |
47061870 |
ggcttcaccctatagatgccaagaaagttcatattaatggaaccacagcctatgcagtttct |
47061931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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