View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16734_low_6 (Length: 253)
Name: NF16734_low_6
Description: NF16734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16734_low_6 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 6522168 - 6522390
Alignment:
| Q |
17 |
catcagattcaccctcgccatcaccggtgcctgtgccagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
116 |
Q |
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| T |
6522168 |
catcagattcaccctcgccatcaccggtgcctgtgccagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
6522267 |
T |
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| Q |
117 |
tggtggtttttgtatgtgtttttactatatctttgatatattaaatatttaatgtctcactatgtgttaattctggtttttgcagataagggcaacacgt |
216 |
Q |
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| T |
6522268 |
tggtggtttttgtatgtgtttttactatatctttgatatattaaatatttaatgtctcac--tgtgttaattctggtttttgcagataagggcaacacgt |
6522365 |
T |
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| Q |
217 |
caagaaatgtcgtccctgtaatttt |
241 |
Q |
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| T |
6522366 |
caagaaatgtcgtccctgtaatttt |
6522390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 6506501 - 6506438
Alignment:
| Q |
53 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
116 |
Q |
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| T |
6506501 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
6506438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 526 - 463
Alignment:
| Q |
53 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
116 |
Q |
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| T |
526 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 8179 - 8116
Alignment:
| Q |
53 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
116 |
Q |
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|||||||||| |||||| |||||||||| |||||| |||||| ||||||||||| ||||||||| |
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| T |
8179 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
8116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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