View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16734_low_9 (Length: 210)
Name: NF16734_low_9
Description: NF16734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16734_low_9 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 28305523 - 28305314
Alignment:
| Q |
1 |
aattcaatcaaatcgtcgatatcaacaccttggaatgcaagtttacatagtggagacactgctgaggtatggattaggtacaattctacaaccaagaatt |
100 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28305523 |
aattcaatcaaatcatcaatatcaacaccttggaatgcaagtttacatagtggagacactgctgaggtatggattaggtacaattctacaaccaagaatt |
28305424 |
T |
|
| Q |
101 |
tgtctgtatcttgggaatatcaaaccacctctaatcctcaagaaaaaactaatctttcatatcaaattgatttgaagaaagatttacctgaatgggttac |
200 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
28305423 |
tgactgtatcttgggaatatcaaacgacctctagtcctcaagaaaaaactaatctttcatatcaaattgatttcaagaaagttttacctgaatgggttac |
28305324 |
T |
|
| Q |
201 |
aattggattt |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
28305323 |
aattggattt |
28305314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 28278373 - 28278582
Alignment:
| Q |
1 |
aattcaatcaaatcgtcgatatcaacaccttggaatgcaagtttacatagtggagacactgctgaggtatggattaggtacaattctacaaccaagaatt |
100 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
28278373 |
aattcaatcaaatcatcaatatcaacaccttggaatgcaagtttacatagtggagacaatgctgaggtatggattagctacaattctaaaaccaagaatt |
28278472 |
T |
|
| Q |
101 |
tgtctgtatcttgggaatatcaaaccacctctaatcctcaagaaaaaactaatctttcatatcaaattgatttgaagaaagatttacctgaatgggttac |
200 |
Q |
| |
|
|| |||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| || |
|
|
| T |
28278473 |
tgactgtatcttgggaatatcaaactacccctagtcctcaagaaaaaactaatctttcatatcaaattgatttgatgaaggtcctacctgaatgggtaac |
28278572 |
T |
|
| Q |
201 |
aattggattt |
210 |
Q |
| |
|
|||||||| |
|
|
| T |
28278573 |
tgttggattt |
28278582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 28295297 - 28295122
Alignment:
| Q |
25 |
acaccttggaatgcaagtttacatagtggagacactgctgaggtatggattaggtacaattctacaaccaagaatttgtctgtatcttgggaatatcaaa |
124 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| |||| |
|
|
| T |
28295297 |
acaccttggaatgccagcaaacatagtggagacactgctgaggtatggattaggtacaattctacaaccaagaatttgaccgtatcttggaaataccaaa |
28295198 |
T |
|
| Q |
125 |
ccacctctaatcctcaagaaaaaactaatctttcatatcaaattgatttgaagaaagatttacctgaatgggttac |
200 |
Q |
| |
|
| ||||| |||||||||||||| |||| ||||||| | ||||||||| | ||||| | | ||||||||| |||| |
|
|
| T |
28295197 |
ctacctcaaatcctcaagaaaatactagtctttcaatttcaattgatttaatgaaagttatgcctgaatggattac |
28295122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 28288227 - 28288396
Alignment:
| Q |
1 |
aattcaatcaaatcgtcgatatcaacaccttggaatgcaagtttacatagtggagacactgctgaggtatggattaggtacaattctacaaccaagaatt |
100 |
Q |
| |
|
|||||||||| || ||| | |||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| || |||||||||||||| |||| |
|
|
| T |
28288227 |
aattcaatcatttcatcggtgtcaacaccttggaacgcaagtttacatagtggagaaactactgaggtatggattaactataattctacaaccaaaaatt |
28288326 |
T |
|
| Q |
101 |
tgtctgtatcttgggaatatcaaaccacctctaatcctcaagaaaaaactaatctttcatatcaaattga |
170 |
Q |
| |
|
|| |||||||||| ||||||||| ||||| | |||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
28288327 |
tgaatgtatcttggaaatatcaaaacacctatgatcctcaagaaaaaactagtatttcatatgaaattga |
28288396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 28265481 - 28265296
Alignment:
| Q |
25 |
acaccttggaatgcaagtttacatagtggagacactgctgaggtatggattaggtacaattctacaaccaagaatttgtctgtatcttgggaatatcaaa |
124 |
Q |
| |
|
|||||||||||||| ||| |||| |||||||||| |||||||||||||||||| | ||||||||||||||||||||| | ||||||||| |||| |||| |
|
|
| T |
28265481 |
acaccttggaatgctagtctacacagtggagacattgctgaggtatggattagtttcaattctacaaccaagaatttaacagtatcttggaaataccaaa |
28265382 |
T |
|
| Q |
125 |
ccacctctaatcctcaagaaaaaactaatctttcatatcaaattgatttgaagaaagatttacctgaatgggttacaattggattt |
210 |
Q |
| |
|
|| || ||||| |||||||||||| ||||||||| |||||||||| | ||| | ||| |||||||||||||| || |||||| |
|
|
| T |
28265381 |
gaacttcaaatccagaagaaaaaactagcctttcatatgaaattgatttaatgaaggttttgcctgaatgggttaccataggattt |
28265296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University