View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_high_103 (Length: 227)
Name: NF16735_high_103
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_high_103 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 23490741 - 23490552
Alignment:
| Q |
1 |
aacacgacaccaacaagtgactgtgggtagtcacgtgggtcggtgtcggacactacactagacatatcttcaatttgaagtttagtagttgctacataag |
100 |
Q |
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| T |
23490741 |
aacacgacaccaacaagtgactatg--tagtctcgtgggtcggtgtcggacacta-----gacaaatctttaatttgaagttcagtaggtgctacataag |
23490649 |
T |
|
| Q |
101 |
cttcaattttttgtatttgttgaatgtgatgatcataataaatacaatgaataacttagcattgtttatgactttgttcttctgaacttgcatatca |
197 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23490648 |
cttcaattttttgtatttgtcgaatgtgatgatcataataaatacaatgaataacttagcattgtttatgactttgttcttctgaacttgcatatca |
23490552 |
T |
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