View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_high_115 (Length: 208)
Name: NF16735_high_115
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_high_115 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 19578393 - 19578219
Alignment:
| Q |
18 |
aaagttagcaaacaaattaaacaagcacacaaatagaaaacatatatactaataaattaggaagacatgcatccaattccatgccttgaagtaggaaaaa |
117 |
Q |
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| T |
19578393 |
aaagttagcaaacaaattaaacaagcacacaaatagaaaacatatatactaataaattaggaagacatgcatccaattccatgccttgaagtaggaaaaa |
19578294 |
T |
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| Q |
118 |
taaggaacaaaccgctacaaattattccaaccatcaaaggaaaactctccataacttgatccatctctttttcat |
192 |
Q |
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| T |
19578293 |
taaggaacaaaccgctacaaattattccaaccatcaaaggaaaactctccataacttgatccatctctttttcat |
19578219 |
T |
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Target: chr7 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 2787244 - 2787364
Alignment:
| Q |
61 |
atatactaataaattaggaagacatgcatccaattccatgccttgaagtaggaaaaataaggaacaaaccgctacaaattattccaaccatcaaaggaaa |
160 |
Q |
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| T |
2787244 |
atatactaaaaaattaggcagacatgcatccaattccacgccttgaagttggaaaaataagaaacaaaccgctacaaacaattccaaccatcaatggaaa |
2787343 |
T |
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| Q |
161 |
actctccataacttgatccat |
181 |
Q |
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| T |
2787344 |
actctccataacttgatccat |
2787364 |
T |
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