View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16735_high_12 (Length: 556)

Name: NF16735_high_12
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16735_high_12
NF16735_high_12
[»] chr5 (4 HSPs)
chr5 (11-540)||(7236809-7237338)
chr5 (270-427)||(41715045-41715200)
chr5 (270-461)||(38755597-38755779)
chr5 (293-461)||(19276893-19277062)
[»] chr4 (5 HSPs)
chr4 (11-206)||(49591019-49591214)
chr4 (269-403)||(865244-865378)
chr4 (272-427)||(3284107-3284251)
chr4 (366-403)||(9838604-9838641)
chr4 (501-540)||(49590922-49590961)
[»] chr6 (6 HSPs)
chr6 (272-461)||(1415477-1415666)
chr6 (260-426)||(33908569-33908728)
chr6 (273-461)||(9627145-9627315)
chr6 (353-444)||(12155925-12156016)
chr6 (297-459)||(10383956-10384117)
chr6 (270-347)||(12155394-12155469)
[»] chr8 (5 HSPs)
chr8 (253-427)||(14958016-14958190)
chr8 (251-330)||(9293212-9293291)
chr8 (278-382)||(15292567-15292670)
chr8 (278-382)||(15472936-15473039)
chr8 (334-386)||(42501015-42501067)
[»] scaffold0035 (1 HSPs)
scaffold0035 (271-427)||(24413-24568)
[»] chr1 (6 HSPs)
chr1 (270-426)||(7440836-7440990)
chr1 (273-427)||(6397661-6397812)
chr1 (270-325)||(28666876-28666931)
chr1 (252-461)||(30848910-30849115)
chr1 (354-461)||(41941071-41941178)
chr1 (270-318)||(41941198-41941246)
[»] chr3 (8 HSPs)
chr3 (272-385)||(8543073-8543187)
chr3 (276-388)||(11630060-11630172)
chr3 (272-345)||(8541441-8541515)
chr3 (303-425)||(43361611-43361733)
chr3 (356-417)||(35223400-35223461)
chr3 (411-461)||(8540986-8541036)
chr3 (302-399)||(29794573-29794670)
chr3 (433-461)||(8543037-8543065)
[»] chr2 (4 HSPs)
chr2 (270-459)||(31395158-31395341)
chr2 (270-347)||(38288441-38288518)
chr2 (278-417)||(13486134-13486272)
chr2 (302-417)||(15358849-15358961)
[»] scaffold0027 (1 HSPs)
scaffold0027 (250-438)||(43596-43784)
[»] chr7 (2 HSPs)
chr7 (293-394)||(43814344-43814447)
chr7 (270-316)||(15077110-15077156)


Alignment Details
Target: chr5 (Bit Score: 495; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 11 - 540
Target Start/End: Original strand, 7236809 - 7237338
Alignment:
Q  11 aagcaaaggaagagaatgttaccttgcctcagtatgatgataaagatgaccctaaattattcaatcaaagagttgtacaattttcaaagttattgaataa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7236809 aagcaaaggaagagaatgttaccttgcctcagtatgatgataaagatgaccctaaattattcaatcaaagagttgtacaattttcaaagttattgaataa 7236908  T
Q  111 agattcactagagaagttgcattatttgcatgcagtcataactgagacactaagattgtatcctgcggttcctcaggtatgcattttttggatctaaata 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7236909 agattcactagagaagttgcattatttgcatgcagtcataactgagacactaagattgtatcctgcggttcctcaggtatgcattttttggatctaaata 7237008  T
Q  211 tggtagttttgtaatgaaaattgaaaacatgaaacataatctttgttaaaacagtaaccagtaacaaaagattaaataagagaacgaaagaaaaagacaa 310  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7237009 tggtagttttgtaatgaaaattgaaaacatgaaacataatctctgttagaacagtaaccagtaacaaaagattaaataagagaacgaaagaaaaagacaa 7237108  T
Q  311 tgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctatagttccgtttttattactgtgataagaattag 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  7237109 tgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctataattccatttttattactgtgataagaattag 7237208  T
Q  411 ggtttcagtgttacaagttgtgtatatagtactactacgattcagtttacatatagatgctaaaaatgttgttttaaatacatcaataac-taactaata 509  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7237209 ggtttcggtgttacaagttgtgtatatagtactactacga-tcagtttacatatagatgctaaaaatgttgttttaaatacatcaataacttaactaata 7237307  T
Q  510 atgtttttgtgcaaatatcaattgttgattg 540  Q
    |||||||||||||||||||||||||||||||    
T  7237308 atgtttttgtgcaaatatcaattgttgattg 7237338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 270 - 427
Target Start/End: Complemental strand, 41715200 - 41715045
Alignment:
Q  270 agtaacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatag 369  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||| |||||  ||||||  ||||||||| ||||| || |||||||| || | ||||    
T  41715200 agtaacaaaagattaaataagagaacgaaagagaaagacaattaacatacgat-cttgttaatgcagttcggacaattgtgcctacctctacgacgatag 41715102  T
Q  370 agcagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaag 427  Q
    |||| |||||||||||||| |||||||||||| |||| ||||| ||||||||||||||    
T  41715101 agcatctatagttccgtttctattactgtgatgagaa-taggggttcagtgttacaag 41715045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 270 - 461
Target Start/End: Complemental strand, 38755779 - 38755597
Alignment:
Q  270 agtaacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatag 369  Q
    |||||||||||||||||||||||||||||||| ||||   |||||||||| ||||||||||   ||||| || ||||| || |||||||||||  |||||    
T  38755779 agtaacaaaagattaaataagagaacgaaagagaaag---atgaacacaccatatttgttaatacagtttggtcaattgtgcctacctctgcgattatag 38755683  T
Q  370 agcagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaagttgtgtatatagtactactacgattcagtttaca 461  Q
    |  || |||||||||     |||||||||||||| || ||| |||| ||||||||||  ||| ||||||| |||||||||| |||| |||||    
T  38755682 aatagttatagttcc-----tattactgtgataa-aaatagagttttagtgttacaaactgtatatatagcactactacgactcaggttaca 38755597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 461
Target Start/End: Complemental strand, 19277062 - 19276893
Alignment:
Q  293 aacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctatagttccgtttttat 392  Q
    |||||||  |||| |||||||||||||||| ||| ||| | || ||||| ||||  ||| ||||  || | ||||||| || |||||||| ||||| |||    
T  19277062 aacgaaaataaaaaacaatgaacacacgatctttattaactcaattcggtcaatgatgtttaccgttgtgactatagatcaactatagtttcgtttgtat 19276963  T
Q  393 tactgtgataagaattagggtttcagtgttacaagttgtgtatatagtac---tactacgattcagtttaca 461  Q
    |||||||||  || ||||||||||| |||||| ||   | ||||||||||   ||||||||||||| |||||    
T  19276962 tactgtgat--gatttagggtttcaatgttactagcaatatatatagtacaattactacgattcagattaca 19276893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 8e-78; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 49591214 - 49591019
Alignment:
Q  11 aagcaaaggaagagaatgttaccttgcctcagtatgatgataaagatgaccctaaattattcaatcaaagagttgtacaattttcaaagttattgaataa 110  Q
    |||||||||||||||||||||| |||||||| | ||||||||||||||||| | |||| ||||||||||| || ||||||||||||||||||||||||||    
T  49591214 aagcaaaggaagagaatgttacattgcctcaatgtgatgataaagatgaccttgaattgttcaatcaaagggtagtacaattttcaaagttattgaataa 49591115  T
Q  111 agattcactagagaagttgcattatttgcatgcagtcataactgagacactaagattgtatcctgcggttcctcaggtatgcattttttggatcta 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||| ||||    
T  49591114 agattcactagagaagttgcattatttgcatgcagtcataactgagactctaagattgtatccggcagttcctcaggtatgcattttttgggtcta 49591019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 269 - 403
Target Start/End: Original strand, 865244 - 865378
Alignment:
Q  269 cagtaacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctata 368  Q
    ||||||||||| |||||||||||||||||||| |||||| |||||| ||||||||||||||| ||  |||||  ||||| ||| || |||| || |||||    
T  865244 cagtaacaaaaaattaaataagagaacgaaagtaaaagaaaatgaaaacacgatatttgttaacgtggttcgatcaattgtgtttatctctacgactata 865343  T
Q  369 gagcagctatagttccgtttttattactgtgataa 403  Q
    ||| ||||||| |||||||| ||||  ||||||||    
T  865344 gagtagctataattccgtttctattgttgtgataa 865378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 272 - 427
Target Start/End: Original strand, 3284107 - 3284251
Alignment:
Q  272 taacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagag 371  Q
    ||||| |||||||||||| ||| |||||| ||||||||||||||| |||||||||||||    | ||||||         ||| ||||| | |||||||     
T  3284107 taacataagattaaataaaagaccgaaagtaaaagacaatgaacatacgatatttgttaaaagatttcggc---------ctatctctgtgactatagaa 3284197  T
Q  372 cagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaag 427  Q
    ||  ||||||||||||||||||||||||||  |||||||||||| || ||||||||    
T  3284198 caattatagttccgtttttattactgtgat--gaattagggttttagcgttacaag 3284251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 403
Target Start/End: Complemental strand, 9838641 - 9838604
Alignment:
Q  366 atagagcagctatagttccgtttttattactgtgataa 403  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9838641 atagagcagctatagttccgtttttattactgtgataa 9838604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 501 - 540
Target Start/End: Complemental strand, 49590961 - 49590922
Alignment:
Q  501 taactaataatgtttttgtgcaaatatcaattgttgattg 540  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  49590961 taactaataatgttttagtgcaaatatcaattgttgattg 49590922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 4e-58; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 272 - 461
Target Start/End: Complemental strand, 1415666 - 1415477
Alignment:
Q  272 taacaaaagattaaataagagaacgaaaga-aaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctataga 370  Q
    |||||||||||||| ||||||||||||||| |||||||||| || |||||||| |||||| |||||||||||||||| || |||||||| ||  ||||||    
T  1415666 taacaaaagattaa-taagagaacgaaagagaaaagacaataaatacacgatacttgttaacgcagttcggccaattgtggctacctctacgattataga 1415568  T
Q  371 gcagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaagttgtgtatatagtactactacgattcagtttaca 461  Q
    ||||||||||||| |||| ||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  1415567 gcagctatagttctgtttctattattgtgataagaattagggtttcaatgttacaagttgtatatatagtactactatgattcagtttaca 1415477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 260 - 426
Target Start/End: Original strand, 33908569 - 33908728
Alignment:
Q  260 aacagtaaccagtaacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctct 359  Q
    ||||| ||| |||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| |||||| || |||||       
T  33908569 aacagcaactagtaacaaaatattaaataagagaacgaaagagaaagacaatgaacacatgatatttgttaacgcagttcgaccaattgtgcctacc--- 33908665  T
Q  360 gcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaa 426  Q
        ||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  33908666 ----ctatagagctgctatagttccgtttctattactgtgataggaattagggtttcagtgttacaa 33908728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 273 - 461
Target Start/End: Original strand, 9627145 - 9627315
Alignment:
Q  273 aacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagc 372  Q
    |||||||||||||||||||||| |||||| ||| |||||||||||| ||||||||||| | |||||| ||||||| |||||                |||    
T  9627145 aacaaaagattaaataagagaatgaaagagaaacacaatgaacacatgatatttgttaacccagttcagccaattgtgtct----------------agc 9627228  T
Q  373 agctatagttccgtttttattactgtgataagaattagggtttcagtgttacaagttgtgtatatagtactactacgattcagtttaca 461  Q
    ||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||    
T  9627229 agctatagttctgtttctatcactgtgataagaattagggtttcagtgttacaag--caatatatagtactactacgattcagtttaca 9627315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 353 - 444
Target Start/End: Original strand, 12155925 - 12156016
Alignment:
Q  353 tacctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaagttgtgtatatagtacta 444  Q
    ||||| |||| |||||| ||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||    
T  12155925 tacctatgcgactatagggcaactatagttccgtttctattactgtgataagaattaggatttcagtgttacaaactgtatatatagtacta 12156016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 297 - 459
Target Start/End: Original strand, 10383956 - 10384117
Alignment:
Q  297 aaagaaaaagacaatgaacacacgatatttgttaccgca-gttcggccaattttgtctacctctgcggctatagagcagctatagttccgtttttattac 395  Q
    |||| ||||||||||||||||| ||| ||||||| | || |||||||||||  ||  ||||||||||  |||||| ||  ||||||| | ||| ||||||    
T  10383956 aaagtaaaagacaatgaacacatgatctttgttaacacatgttcggccaatgatgcttacctctgcgattatagaacaattatagtttcatttgtattac 10384055  T
Q  396 tgtgataagaattagggtttcagtgttacaagttgtgtatatagtactactacgattcagttta 459  Q
    ||||||||  |||||||||| ||| ||| ||||  | ||||||| |||||||||||||||||||    
T  10384056 tgtgataa--attagggttttagtattataagtaatatatatagaactactacgattcagttta 10384117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 12155394 - 12155469
Alignment:
Q  270 agtaacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaatt 347  Q
    |||||||||| ||||  ||||||||||||||| ||||||||||||||||| |||||| ||| | ||||||||| ||||    
T  12155394 agtaacaaaaaatta--taagagaacgaaagagaaagacaatgaacacacaatattttttaacacagttcggcaaatt 12155469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 253 - 427
Target Start/End: Complemental strand, 14958190 - 14958016
Alignment:
Q  253 ttgttaaaacagtaaccagtaacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtc 352  Q
    |||||| ||||  ||| ||||||||||||||||| ||||||||||||||  ||||||||||||| | ||||||||||| | |||||||||||||| || |    
T  14958190 ttgttagaacaacaactagtaacaaaagattaaacaagagaacgaaagaggaagacaatgaacataggatatttgttaacacagttcggccaattgtgcc 14958091  T
Q  353 tacctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaag 427  Q
    ||||||||||  ||||||||||||||||||  |||| ||||||||||| ||||||||||||||||||||||||||    
T  14958090 tacctctgcgattatagagcagctatagttatgtttctattactgtgagaagaattagggtttcagtgttacaag 14958016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 330
Target Start/End: Original strand, 9293212 - 9293291
Alignment:
Q  251 ctttgttaaaacagtaaccagtaacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgtta 330  Q
    |||||||| ||||  |||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  9293212 ctttgttagaacatcaaccggtaacaaaagattaaataagagaacaaaagagaaagacaatgaacacacaatatttgtta 9293291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 278 - 382
Target Start/End: Original strand, 15292567 - 15292670
Alignment:
Q  278 aagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagcta 377  Q
    ||||||||||||||||||||||| |||||  ||||||||||||||| |||||| ||||||||| |||||| || ||| |||| || ||||| |||| |||    
T  15292567 aagattaaataagagaacgaaagtaaaagttaatgaacacacgata-ttgttaacgcagttcgaccaattgtgcctatctctacgactataaagcaacta 15292665  T
Q  378 tagtt 382  Q
    |||||    
T  15292666 tagtt 15292670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 278 - 382
Target Start/End: Original strand, 15472936 - 15473039
Alignment:
Q  278 aagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagcta 377  Q
    ||||||||||||||||||||||| |||||  ||||||||||||||| |||||| ||||||||| |||||| || ||| |||| || ||||| |||| |||    
T  15472936 aagattaaataagagaacgaaagtaaaagttaatgaacacacgata-ttgttaacgcagttcgaccaattgtgcctatctctacgactataaagcaacta 15473034  T
Q  378 tagtt 382  Q
    |||||    
T  15473035 tagtt 15473039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 386
Target Start/End: Complemental strand, 42501067 - 42501015
Alignment:
Q  334 cagttcggccaattttgtctacctctgcggctatagagcagctatagttccgt 386  Q
    |||||||||||||| ||||||||||| | || ||||||  |||||||||||||    
T  42501067 cagttcggccaattgtgtctacctctacagccatagagttgctatagttccgt 42501015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 271 - 427
Target Start/End: Complemental strand, 24568 - 24413
Alignment:
Q  271 gtaacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctataga 370  Q
    |||||| |||||||||||||||||| |||| ||||||||||||| ||||||| || ||||  |   ||||||||||| || ||||||||||| |||||||    
T  24568 gtaacagaagattaaataagagaacaaaagtaaaagacaatgaaaacacgatctt-gttaaagttattcggccaattatgcctacctctgcgactataga 24470  T
Q  371 gcagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaag 427  Q
    |||||| ||||||||||| |||||| ||||||||| |||| ||||| ||||||||||    
T  24469 gcagctgtagttccgtttctattacagtgataagacttagagtttcggtgttacaag 24413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 270 - 426
Target Start/End: Complemental strand, 7440990 - 7440836
Alignment:
Q  270 agtaacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatag 369  Q
    ||||||| ||||||||||||||||||||||| |||| |||||  | | ||||||||||||| |||||||||||||||| | | ||| |||||| ||||||    
T  7440990 agtaacataagattaaataagagaacgaaagtaaaaaacaatatatatacgatatttgttaacgcagttcggccaattatatttacttctgcgactatag 7440891  T
Q  370 agcagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaa 426  Q
    ||| | |||||||  |||||||||| ||||||  ||||||| ||||| |||||||||    
T  7440890 agcggttatagttttgtttttattattgtgat--gaattagagtttcggtgttacaa 7440836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 273 - 427
Target Start/End: Original strand, 6397661 - 6397812
Alignment:
Q  273 aacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagc 372  Q
    |||| |||||||||||||||||| |||| |||| |||| ||||| || |||||||||| |||| ||||||| ||| || ||||||||| | |||||||||    
T  6397661 aacataagattaaataagagaaccaaagtaaaacacaacgaacatacaatatttgttaacgcacttcggcc-attgtgcctacctctgtgactatagagc 6397759  T
Q  373 agctatagttccgtttttattactgtgataagaattagggtttcagtgttacaag 427  Q
    ||||||||||  |||| ||||||||||||  ||| || |||||||||||||||||    
T  6397760 agctatagttttgtttctattactgtgat--gaactaaggtttcagtgttacaag 6397812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 270 - 325
Target Start/End: Complemental strand, 28666931 - 28666876
Alignment:
Q  270 agtaacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatt 325  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  28666931 agtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcacgatatt 28666876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 461
Target Start/End: Complemental strand, 30849115 - 30848910
Alignment:
Q  252 tttgttaaaacagtaaccagtaacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgt 351  Q
    ||||||| ||||  |||| ||||||||||||||| ||||| ||| |||  |||||||||||||||||| || |||||||   |||||  ||||||  ||     
T  30849115 tttgttagaacaaaaaccggtaacaaaagattaa-taaga-aactaaaataaaagacaatgaacacactatctttgttaaaacagtttagccaatggtgc 30849018  T
Q  352 ctacctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaagttgtgtatatagtactactacgat 451  Q
    |||||||||||  ||||||||| |||||||   |||| |  |||||||||  |||||||||||| |||| |||||    | |||||||||| ||||| ||    
T  30849017 ctacctctgcgattatagagcaactatagtattgtttctgctactgtgat--gaattagggtttaagtggtacaaacaatatatatagtaccactacaat 30848920  T
Q  452 tcagtttaca 461  Q
    ||||||||||    
T  30848919 tcagtttaca 30848910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 461
Target Start/End: Complemental strand, 41941178 - 41941071
Alignment:
Q  354 acctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaagttgtgtata---tagtactactacga 450  Q
    ||||||||| | |||||| |||||||||||  ||| | ||| ||||||  |||||||||||||| ||||||||||  | ||||   || |||||||||||    
T  41941178 acctctgcgacaatagagtagctatagttctatttatgtta-tgtgat--gaattagggtttcaatgttacaagtaatatatatactactactactacga 41941082  T
Q  451 ttcagtttaca 461  Q
    |||||||||||    
T  41941081 ttcagtttaca 41941071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 41941246 - 41941198
Alignment:
Q  270 agtaacaaaagattaaataagagaacgaaagaaaaagacaatgaacaca 318  Q
    ||||||| |||||||||||||||||| |||  |||||| ||||||||||    
T  41941246 agtaacagaagattaaataagagaacaaaaataaaagataatgaacaca 41941198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 272 - 385
Target Start/End: Complemental strand, 8543187 - 8543073
Alignment:
Q  272 taacaaaagattaaataagagaacgaaagaa-aaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctataga 370  Q
    |||||||||||||||||||||||||||  || |||||||||||||| ||||||||||||| |||||||||||||||| || ||||||| | | |||||||    
T  8543187 taacaaaagattaaataagagaacgaagaaagaaagacaatgaacatacgatatttgttaacgcagttcggccaattgtgcctacctcggtgactataga 8543088  T
Q  371 gcagctatagttccg 385  Q
     || |||||||||||    
T  8543087 acaactatagttccg 8543073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 276 - 388
Target Start/End: Complemental strand, 11630172 - 11630060
Alignment:
Q  276 aaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagc 375  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||||||||| | ||||| |||||||| ||  ||| ||| || ||||| ||||      
T  11630172 aaaagattaaataagagaacaaaagaaaaagacaatgatcatacgatatttgttaacacagtttggccaattgtgcatacatctacgactataaagcaat 11630073  T
Q  376 tatagttccgttt 388  Q
    |||||||||||||    
T  11630072 tatagttccgttt 11630060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 8541515 - 8541441
Alignment:
Q  272 taacaaaagattaaataagagaacgaa-agaaaaagacaatgaacacacgatatttgttaccgcagttcggccaa 345  Q
    ||||||||||||||||||||||||||| ||| |||||||| | ||||||||||||||||| ||||||||||||||    
T  8541515 taacaaaagattaaataagagaacgaagagagaaagacaacgcacacacgatatttgttaacgcagttcggccaa 8541441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 303 - 425
Target Start/End: Complemental strand, 43361733 - 43361611
Alignment:
Q  303 aaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctatagttccgtttttattactgtgata 402  Q
    |||||||||||||||| ||||||||||| || |||| |||||||  | |||||||||||  ||||| ||||| | ||||| ||||| ||||| ||||||     
T  43361733 aaagacaatgaacacatgatatttgttaacgtagtttggccaatgatatctacctctgcaactatacagcagttttagtttcgtttgtattaatgtgatg 43361634  T
Q  403 agaattagggtttcagtgttaca 425  Q
    ||||||| ||||||||| |||||    
T  43361633 agaattaaggtttcagtattaca 43361611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 417
Target Start/End: Original strand, 35223400 - 35223461
Alignment:
Q  356 ctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttca 417  Q
    ||||||| ||||||||||||||||||||||||| |||| ||| ||| | |||||||||||||    
T  35223400 ctctgcgactatagagcagctatagttccgtttatatttctgcgatgaaaattagggtttca 35223461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 461
Target Start/End: Complemental strand, 8541036 - 8540986
Alignment:
Q  411 ggtttcagtgttacaagttgtgtatatagtactactacgattcagtttaca 461  Q
    |||||| || ||||||| ||| |||||||||||||||||||||||||||||    
T  8541036 ggtttctgttttacaagctgtatatatagtactactacgattcagtttaca 8540986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 399
Target Start/End: Original strand, 29794573 - 29794670
Alignment:
Q  302 aaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctatagttccgtttttattactgtg 399  Q
    ||||||||||  ||||||||||||||||| |||| ||||  ||||| || |||| | | ||  | ||||||||||||||||  |||| ||||||||||    
T  29794573 aaaagacaatagacacacgatatttgttaacgcaattcgatcaattgtgcctacttatacgattgtagagcagctatagttttgtttctattactgtg 29794670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 461
Target Start/End: Complemental strand, 8543065 - 8543037
Alignment:
Q  433 tatatagtactactacgattcagtttaca 461  Q
    |||||||||||||||||||||||||||||    
T  8543065 tatatagtactactacgattcagtttaca 8543037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 270 - 459
Target Start/End: Original strand, 31395158 - 31395341
Alignment:
Q  270 agtaacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatag 369  Q
    |||||||||| || |||||||| |||||||| ||||||||||||||||| ||||||||||| | ||| ||| |||||  ||  || || ||  ||||||     
T  31395158 agtaacaaaatat-aaataagaaaacgaaagtaaaagacaatgaacacatgatatttgttaacacagctcgtccaatggtgcttatctatg--gctataa 31395254  T
Q  370 agcagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaagttgtgtatatagtactactacgattcagttta 459  Q
    |||||||||| |||||||| |||||||| ||| |   |||||||||||||||||||||   | |||||||||||||||||||||| ||||    
T  31395255 agcagctataattccgtttatattactgcgatga---ttagggtttcagtgttacaagcaatatatatagtactactacgattcaattta 31395341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 38288441 - 38288518
Alignment:
Q  270 agtaacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaatt 347  Q
    ||||||||||||||||||||||||  |||||| ||||||||| |||||| ||||||||||| || |||||||||||||    
T  38288441 agtaacaaaagattaaataagagattgaaagagaaagacaattaacacatgatatttgttaacgtagttcggccaatt 38288518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 278 - 417
Target Start/End: Original strand, 13486134 - 13486272
Alignment:
Q  278 aagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagcta 377  Q
    |||||||||||||||||||||||||||| |||||||||| || |||||| ||| | ||||||   ||||| |  |||||| || | ||||||| || |||    
T  13486134 aagattaaataagagaacgaaagaaaaa-acaatgaacatacaatattttttaacacagttcaatcaattgtacctacctatgtgactatagatcaacta 13486232  T
Q  378 tagttccgtttttattactgtgataagaattagggtttca 417  Q
    | ||||  ||| ||||||||||| ||||||||||||||||    
T  13486233 ttgttctatttctattactgtgacaagaattagggtttca 13486272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 417
Target Start/End: Original strand, 15358849 - 15358961
Alignment:
Q  302 aaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctatagttccgtttttattactgtgat 401  Q
    ||||| ||||||||||| ||| ||||||| ||||||| | | |||  || ||||||||||| ||||||| || |||| ||||||||| || |||||||||    
T  15358849 aaaaggcaatgaacacaagatctttgttaacgcagtttgactaatgatgcctacctctgcgactatagaacaactattgttccgtttgta-tactgtgat 15358947  T
Q  402 aagaattagggtttca 417  Q
      ||||||||||||||    
T  15358948 --gaattagggtttca 15358961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 250 - 438
Target Start/End: Original strand, 43596 - 43784
Alignment:
Q  250 tctttgttaaaacagtaaccagtaacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaatttt 349  Q
    ||||||||| | ||| ||| ||||  ||| |||||||||||||||| ||||| ||||| ||| ||||||  ||||||||||  ||| ||||||||||| |    
T  43596 tctttgttagagcagcaactagtataaaatgattaaataagagaacaaaagagaaagataataaacacataatatttgttaatgcaattcggccaattat 43695  T
Q  350 gtctacctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaagttgtgtatata 438  Q
    || || || || | |||| || || | ||||||| | || ||||||| |||||| |||||  |||||| ||||||||||||| ||||||    
T  43696 gtttatctatgtgactattgaacaacaatagttctgattctattactatgataaaaattaaagtttcaatgttacaagttgtatatata 43784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 293 - 394
Target Start/End: Original strand, 43814344 - 43814447
Alignment:
Q  293 aacgaaagaaaaagacaatgaacaca--cgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctatagttccgttttt 390  Q
    |||||||| ||||||||||| |||||  |||| ||| ||| || |||||||||| || || ||||||||||| |||||||| || ||||||||||||| |    
T  43814344 aacgaaagtaaaagacaatggacacaatcgatcttttttaacgtagttcggccagttgtgcctacctctgcgactatagagaagttatagttccgtttgt 43814443  T
Q  391 atta 394  Q
    ||||    
T  43814444 atta 43814447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 316
Target Start/End: Original strand, 15077110 - 15077156
Alignment:
Q  270 agtaacaaaagattaaataagagaacgaaagaaaaagacaatgaaca 316  Q
    |||||||| |||||||||||||||||||||| |||| ||||||||||    
T  15077110 agtaacaacagattaaataagagaacgaaagtaaaaaacaatgaaca 15077156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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