View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16735_high_14 (Length: 518)

Name: NF16735_high_14
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16735_high_14
NF16735_high_14
[»] chr1 (2 HSPs)
chr1 (1-502)||(41525140-41525638)
chr1 (1-293)||(36933297-36933581)


Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 41525638 - 41525140
Alignment:
Q  1 gagaaacccaaaatgtcatcaagttttgaaatgaacgagcaagatagagtgaaatcaacaccaaaataaaagctcaccttttt-ccaatctctaccatgc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  41525638 gagaaacccaaaatgtcatcaagttttgaaatgaacgagcaagatagagtgaaatcaacaccaaaacaaaagctcaccttttttccaatctctaccatgc 41525539  T
Q  100 tctccgtatacttcatagaagttctctagttccctattgctccactgaggtcccaatttatcagacaaattcttcttcttcttctgtgcattgaagagga 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41525538 tctccgtatacttcatagaagttctctagttccctattgctccactgaggtcccaatttatcagacaaattcttcttcttcttctgtgcattgaagagga 41525439  T
Q  200 ttcaaaatttgagatttaaaacaggagattaaatcttgttcatgttcagcgcatactataatggacagcaattaatatgcatgatgcatggatatacctc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||    
T  41525438 ttcaaaatttgagatttaaaacaggagattaaatcttgttcatgttcagcgcat----taatggacagcaattaatatgcatgatgcatggatatacctc 41525343  T
Q  300 agcaaaaaatatatgaattaacagatgtatccatactccacggaattattctacagtattaaaggtaaccaaaaaatatacctcagcaaaagaagcagtt 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41525342 agcaaaaaatatatgaattaacagatgtatccatactccacggaattattctacagtattaaaggtaaccaaaaaatatacctcagcaaaagaagcagtt 41525243  T
Q  400 ccttgcttggaagccgcacctttcttggaaggaggtccaagtttgcactacacagcaaataatatatgaattaacagagtacatcaacatcaaccaatct 499  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41525242 ccttgcttggaagccgcacctttcttagaaggaggtccaagtttgcactacacagcaaataatatatgaattaacagagtacatcaacatcaaccaatct 41525143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 36933581 - 36933297
Alignment:
Q  1 gagaaacccaaaatgtcatcaagttttgaaatgaacgagcaagatagagtgaaatcaacaccaaaataaaagctcacctttttccaatctctaccatgct 100  Q
    |||||| |||||||||| |||||||||||||||||  ||||||| |||| |||| ||||||||||| |||||| |||||| ||||||||| |||||||||    
T  36933581 gagaaaaccaaaatgtcctcaagttttgaaatgaataagcaagagagagagaaaacaacaccaaaacaaaagcacaccttcttccaatctttaccatgct 36933482  T
Q  101 ctccgtatacttcatagaagttctctagttccctattgctccactgaggtcccaatttatcagacaaattcttcttcttcttctgtgcattgaagaggat 200  Q
     || |||| ||||||||||   |||||||||||  ||||||||||||| ||||||||||||||||||      ||||||||||||||||||||| |||||    
T  36933481 ttctgtatgcttcatagaatcgctctagttcccccttgctccactgagatcccaatttatcagacaa------cttcttcttctgtgcattgaacaggat 36933388  T
Q  201 tcaaaatttgagatttaaaacaggagattaaatcttgttcatgttcagcgcatactataatggacagcaattaatatgcatgatgcatggata 293  Q
    ||| ||| |||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36933387 tcacaatgtgaggttt-aaacaggagattaaa-cttgttcatgttcagcgcatactataatggacagcaattaatatgcatgatgcatggata 36933297  T

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