View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_high_19 (Length: 453)
Name: NF16735_high_19
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 109 - 437
Target Start/End: Complemental strand, 35482449 - 35482121
Alignment:
| Q |
109 |
ccatcaaaatacgacaacctcgacatcccaggtcgcattgacatcctcgccaaccgtctcggtgcctggcacgaatacgctcctctcatcacttccctcc |
208 |
Q |
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| T |
35482449 |
ccatcaaaatacgacaacctcgacatcccaggtcgcatcgacatcctcgccaaccgtctcggtgcctggcacgaatacgctcctctcatcacttccctcc |
35482350 |
T |
|
| Q |
209 |
tccgtgaaggcttttcacctcccacccttgaagaaaccaccggcatcaccggtgtcgaacagaatcgtatcatagtcgcaactcaagttcgtgacactct |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35482349 |
tccgtgaaggcttttcacctcccacccttgaagaaaccaccggcatcaccggtgtcgaacagaatcgtatcatagtcgcaactcaagttcgtgacactct |
35482250 |
T |
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| Q |
309 |
tgtacaggccaacactgatgaagagattctatcttactttgatagcggtggtgctgaagttttatatgaaattcgtctcctctccacttcccaacgtgct |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35482249 |
tgtacaggccaacactgatgaagagattctatcttactttgatagcggtggtgctgaagttttatatgaaattcgtctcctctccacttcccaacgtgct |
35482150 |
T |
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| Q |
409 |
gctgcagcacgtttcattgtggagaagag |
437 |
Q |
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|||||||| |||||||||||||||||||| |
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| T |
35482149 |
gctgcagcgcgtttcattgtggagaagag |
35482121 |
T |
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