View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_high_24 (Length: 442)
Name: NF16735_high_24
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Complemental strand, 41277761 - 41277355
Alignment:
| Q |
19 |
catatataagtgtaacttattttaatagtatctttaatttttaattagtgtccaagatcaaaaacagaaattgaattagtgtttcttttaataggctaaa |
118 |
Q |
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| T |
41277761 |
catatataagtgtaacttattttaatagtatctttaatttttaattagtgtccaagatcaaaaacagaaattgaattagtgttgcttttaatagactaaa |
41277662 |
T |
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| Q |
119 |
tgtaagatttctttagagattttnnnnnnnnnn-ctctagagtctaagttttgtttcatgtttattgcaggtgaacaaaaactacaagctattaacaaat |
217 |
Q |
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| T |
41277661 |
tgtaagatttctttagagatttaaaaaaaaaaaactctagagtctaagttttgtttcatgtttattccaggtgaacaaaaactacaagctattaacaaat |
41277562 |
T |
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| Q |
218 |
aatgtgttgaagagattgaagcttcttgtaatggtaattagcgaggaggaaaatacttctgcatttggattaatctctcgtgctaagtctttggcaacca |
317 |
Q |
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| T |
41277561 |
aatgtgttgaagagattgaagcttcttgtaaaggtaattagtgaggaggaaaatacttctgcatttggattaatctctcgtgctaagtctttggcaacca |
41277462 |
T |
|
| Q |
318 |
agcgaaccaagctccttttcaccatcatgcgataccttgtaagtccaacaaactcatttgatgaaatcaatatatacacctccataatgtttgaattagg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41277461 |
agcgaaccaagctccttttcaccatcatgcgataccttgtaagtccaacaaactcatttgatgaaatcaatatatacacctccataatgtttgaattagg |
41277362 |
T |
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| Q |
418 |
attctcg |
424 |
Q |
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||||||| |
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| T |
41277361 |
attctcg |
41277355 |
T |
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