View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_high_28 (Length: 431)
Name: NF16735_high_28
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 211 - 415
Target Start/End: Complemental strand, 30319782 - 30319582
Alignment:
| Q |
211 |
atggttaggaaggaaagtgttctagtttttaagaattatatctatgcaatgcaacactctaactaatatataatagcataaaattacaacaacaattcaa |
310 |
Q |
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| T |
30319782 |
atggttaggaaggaaagtgttctagtttttaagaattatatctatgcaatgcaacactctaactaata----atagcataaaattacaacaacaattcaa |
30319687 |
T |
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| Q |
311 |
ttcctcaagatattatactcgttcctctttcatattgctcattttcttcaaatgactttggtttgttcctagacttggaagatggagattcatactccat |
410 |
Q |
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| T |
30319686 |
ttcctcaagatattatactcgttcctctttcatattgctcattttcttcaaatgactttggtttgttcctagacttggaagatggagattcatactccaa |
30319587 |
T |
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| Q |
411 |
attag |
415 |
Q |
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||||| |
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| T |
30319586 |
attag |
30319582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 30319985 - 30319853
Alignment:
| Q |
23 |
tgaacacctacgtagaattcttcaacatttgcaatttatcttaaacaaatcaatgaaaactaaagtgaacaagttgcactagttagtaaattacatatca |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30319985 |
tgaacacctacgtagaattcttcaacatttgcaatttatcttaaacaaatcaatgaaaactaaagtgaacaagttgcactagttagtaaattacatatca |
30319886 |
T |
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| Q |
123 |
gcaatgggtaaataatac-aagactttctattt |
154 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
30319885 |
gcaatgggtaaataatacaaagactttctattt |
30319853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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