View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16735_high_30 (Length: 425)
Name: NF16735_high_30
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_high_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Original strand, 24067778 - 24068170
Alignment:
| Q |
15 |
cacagatggaaaaggtcaaacagttgactttaaaagcacacttattataatgactagcaatcttggtaacaacatcattgaagggacaaataatgaaact |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24067778 |
cacagatggaaaaggtcaaacagttgactttaaaagcacacttattataatgactagcaatcttggtaacaacatcattgaagggacaaataatgaaact |
24067877 |
T |
|
| Q |
115 |
atgcaaattattgatcataaaaagaatttggttatggaggagctgaagaatcattttagaccagagtttttgaataggcttgatgagataattgttttta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24067878 |
atgcaaattattgatcataaaaagaatttggttatggaggagctgaagaatcattttagaccagagtttttgaataggcttgatgagataattgttttta |
24067977 |
T |
|
| Q |
215 |
aagaactaacaaaattggaagtggaacaaattgcaaatataatgttgagagaagtttgtgaaaaaatgatggttaaagatatacatctttcattaacatg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24067978 |
aagaactaacaaaattggaagtggaacaaattgcaaatataatgttgagagaagtttgtgaaaaaatgatggttaaagatatacatctttctttaacatg |
24068077 |
T |
|
| Q |
315 |
taggtttagggattatgtgattcaaaatggatataaccctagctatggtgcaagaccattaagaaggactattgcaagatttttggaagatac |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24068078 |
taggtttagggattatgtgattcaaaatggatataaccctagctatggtgcaagaccattaagaaggactattgcaagatttttggaagatac |
24068170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University