View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16735_high_33 (Length: 420)

Name: NF16735_high_33
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16735_high_33
NF16735_high_33
[»] chr4 (24 HSPs)
chr4 (9-186)||(5817379-5817556)
chr4 (7-186)||(45995892-45996070)
chr4 (10-186)||(24059135-24059309)
chr4 (115-186)||(51579326-51579397)
chr4 (8-186)||(37605689-37605867)
chr4 (101-186)||(41277221-41277306)
chr4 (5-178)||(51579594-51579767)
chr4 (10-186)||(55281214-55281390)
chr4 (116-186)||(25784014-25784084)
chr4 (101-186)||(42179228-42179313)
chr4 (122-186)||(17044009-17044073)
chr4 (115-186)||(20107116-20107188)
chr4 (122-186)||(25164583-25164647)
chr4 (127-186)||(32290220-32290279)
chr4 (22-186)||(32525034-32525198)
chr4 (101-186)||(50498216-50498301)
chr4 (122-186)||(43749098-43749162)
chr4 (127-186)||(3287090-3287149)
chr4 (102-186)||(48525332-48525416)
chr4 (116-186)||(36851233-36851303)
chr4 (143-186)||(39631271-39631314)
chr4 (10-53)||(39631010-39631053)
chr4 (10-64)||(17044130-17044184)
chr4 (5-53)||(48525465-48525513)
[»] chr6 (10 HSPs)
chr6 (10-184)||(9521812-9521991)
chr6 (101-186)||(23915978-23916063)
chr6 (101-186)||(9045839-9045925)
chr6 (122-186)||(14314098-14314162)
chr6 (122-186)||(29429590-29429654)
chr6 (10-186)||(34792651-34792827)
chr6 (133-186)||(1244679-1244732)
chr6 (115-186)||(12748217-12748288)
chr6 (138-186)||(16717996-16718044)
chr6 (9-53)||(16718136-16718180)
[»] chr2 (20 HSPs)
chr2 (4-186)||(36272655-36272837)
chr2 (101-186)||(3121616-3121701)
chr2 (4-186)||(13696959-13697141)
chr2 (104-186)||(14945830-14945912)
chr2 (102-184)||(25333152-25333234)
chr2 (101-186)||(33299985-33300070)
chr2 (10-186)||(32599248-32599424)
chr2 (121-186)||(14242626-14242691)
chr2 (8-186)||(17823585-17823763)
chr2 (101-186)||(23860255-23860340)
chr2 (101-186)||(24475792-24475877)
chr2 (127-186)||(36709308-36709367)
chr2 (114-186)||(4434694-4434766)
chr2 (122-186)||(40095269-40095333)
chr2 (102-186)||(40216415-40216499)
chr2 (101-186)||(42061322-42061407)
chr2 (122-186)||(33555475-33555539)
chr2 (10-64)||(14242524-14242578)
chr2 (10-64)||(33555362-33555416)
chr2 (101-186)||(5562942-5563027)
[»] chr3 (19 HSPs)
chr3 (102-186)||(23004762-23004846)
chr3 (101-186)||(33288138-33288223)
chr3 (10-184)||(54713532-54713706)
chr3 (122-186)||(9271116-9271180)
chr3 (122-186)||(38247804-38247868)
chr3 (122-186)||(50989209-50989273)
chr3 (122-186)||(51092341-51092405)
chr3 (115-186)||(8330697-8330768)
chr3 (122-186)||(46135533-46135597)
chr3 (103-186)||(39947250-39947333)
chr3 (122-188)||(8496710-8496776)
chr3 (101-186)||(12224094-12224179)
chr3 (102-186)||(36674611-36674695)
chr3 (122-186)||(48034921-48034985)
chr3 (10-60)||(46135657-46135707)
chr3 (141-186)||(29915090-29915135)
chr3 (141-186)||(29964243-29964288)
chr3 (8-53)||(36674517-36674562)
chr3 (123-184)||(54413511-54413572)
[»] chr8 (22 HSPs)
chr8 (101-186)||(2599537-2599622)
chr8 (106-186)||(41075693-41075773)
chr8 (122-184)||(8368483-8368545)
chr8 (101-186)||(28898001-28898086)
chr8 (102-186)||(10391397-10391481)
chr8 (106-186)||(31774730-31774810)
chr8 (101-186)||(45413629-45413714)
chr8 (102-186)||(1993732-1993816)
chr8 (122-186)||(16465724-16465788)
chr8 (122-186)||(43066016-43066080)
chr8 (115-186)||(11904859-11904930)
chr8 (133-186)||(14342312-14342365)
chr8 (101-170)||(27497194-27497263)
chr8 (101-158)||(10592010-10592067)
chr8 (106-186)||(31523608-31523688)
chr8 (102-186)||(44081073-44081157)
chr8 (135-186)||(4077086-4077137)
chr8 (102-184)||(45502670-45502752)
chr8 (117-186)||(35200562-35200631)
chr8 (126-186)||(12142087-12142147)
chr8 (10-64)||(14342187-14342241)
chr8 (151-184)||(44077642-44077675)
[»] chr1 (26 HSPs)
chr1 (101-186)||(46845747-46845832)
chr1 (102-186)||(2403017-2403101)
chr1 (101-186)||(526990-527075)
chr1 (101-186)||(39858353-39858438)
chr1 (122-186)||(29637322-29637386)
chr1 (133-186)||(1673375-1673428)
chr1 (101-186)||(49430555-49430640)
chr1 (10-186)||(1994959-1995134)
chr1 (122-186)||(6487734-6487798)
chr1 (102-186)||(26040976-26041060)
chr1 (133-186)||(27325751-27325804)
chr1 (101-186)||(33502615-33502700)
chr1 (133-186)||(44797589-44797642)
chr1 (102-186)||(7178203-7178287)
chr1 (101-186)||(13276555-13276640)
chr1 (104-185)||(19989246-19989327)
chr1 (101-186)||(29731194-29731279)
chr1 (122-186)||(32267577-32267641)
chr1 (101-186)||(15225082-15225167)
chr1 (101-186)||(40314098-40314183)
chr1 (140-186)||(40030844-40030890)
chr1 (124-186)||(40294845-40294907)
chr1 (102-186)||(47571655-47571739)
chr1 (6-57)||(29731323-29731374)
chr1 (102-144)||(12907642-12907684)
chr1 (10-64)||(27325627-27325681)
[»] chr5 (13 HSPs)
chr5 (10-186)||(13988253-13988429)
chr5 (101-186)||(15285335-15285420)
chr5 (101-186)||(43100299-43100384)
chr5 (122-186)||(36890383-36890447)
chr5 (101-186)||(33687653-33687738)
chr5 (10-186)||(11247198-11247374)
chr5 (101-186)||(6043012-6043095)
chr5 (116-186)||(35906000-35906070)
chr5 (131-186)||(8378350-8378405)
chr5 (115-186)||(12248279-12248350)
chr5 (123-186)||(20151390-20151453)
chr5 (116-170)||(1447853-1447907)
chr5 (9-53)||(43100207-43100251)
[»] chr7 (12 HSPs)
chr7 (101-186)||(31741049-31741134)
chr7 (101-186)||(42974469-42974554)
chr7 (102-186)||(38754987-38755071)
chr7 (102-186)||(38349551-38349635)
chr7 (102-185)||(11752604-11752687)
chr7 (10-186)||(46576242-46576418)
chr7 (10-185)||(33496506-33496681)
chr7 (102-186)||(28713683-28713767)
chr7 (122-186)||(47480125-47480188)
chr7 (122-186)||(48460665-48460729)
chr7 (10-186)||(30922710-30922886)
chr7 (117-186)||(37536422-37536491)
[»] scaffold0933 (1 HSPs)
scaffold0933 (122-186)||(3165-3230)


Alignment Details
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 5817379 - 5817556
Alignment:
Q  9 tggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgagnnnnnnngtgtgtgt 108  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||  ||| ||||||||||||       ||||||||    
T  5817379 tggataatgtttcatgtacatccttttctccatacacacattgtaccaccccatgtaaaagtgtgtaggagacaataaatatgagttttttggtgtgtgt 5817478  T
Q  109 ggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    || || |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5817479 ggggaccacatggacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatca 5817556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 45995892 - 45996070
Alignment:
Q  7 tatggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgagnnnnnnngtgtgt 106  Q
    ||||||||||||||||||||||   |||| |||||| |||||||||| ||| |||||| | | |||||   ||| |||| || ||||       ||||||    
T  45995892 tatggataatgtttcatgtacacatttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgt 45995991  T
Q  107 gtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    | ||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45995992 g-ggagaccacaagaacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatca 45996070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 24059135 - 24059309
Alignment:
Q  10 ggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgagnnnnnnngtgtgtgtg 109  Q
    ||||||||||| |||||||  ||||  |||||| |||||||||| |||||||||||| | ||||||  ||| |||||||  ||         ||||||||    
T  24059135 ggataatgttttatgtacacactttcttccatacacacattgtaccaccccatgtaagagtgtgtaagagacaataaat--gatattttttttgtgtgtg 24059232  T
Q  110 gagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |  | |||||| ||||||||||||||||| ||||||||||||| || ||||||||||||||| ||||||||||||||    
T  24059233 ggaaccacatggacacatgtcacaattgtatgtgggtgtacaaatgatacatgccatctaaggtggtctatgtatca 24059309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 51579397 - 51579326
Alignment:
Q  115 cacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  51579397 cacatggacacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 51579326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 37605689 - 37605867
Alignment:
Q  8 atggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgagnnnnnnngtgtgtg 107  Q
    |||||||||||||||||||||  ||||| |||||| |||||||||| ||| |||||| | | |||||    || |||| || |||        |||||||    
T  37605689 atggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagggacaatacatgtgactttttttgtgtgtg 37605788  T
Q  108 tggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
     || || |||| | |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  37605789 gggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 37605867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 41277306 - 41277221
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||| || |||||||||||||||||||||||| |||||||||||| |||||||||| || ||||| || |||||||||||    
T  41277306 gtgtgtgtggggaccacatgaacacatgtcacaattgtatgtgggtgtacaggtggtacatgtcacctaaggtgatctatgtatca 41277221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 51579767 - 51579594
Alignment:
Q  5 tttatggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgagnnnnnnngtgt 104  Q
    |||| ||||||||||| ||||| |  ||||  | |||| |||||||||| |||||||||| | | ||||||  ||| ||||||| ||||       || |    
T  51579767 tttaaggataatgttttatgtaaacactttctttcatacacacattgtaccaccccatgtgagagtgtgtaagagacaataaatgtgagtttttttgtat 51579668  T
Q  105 gtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtct 178  Q
    ||||||  |||||||| ||||||||||||||||| | |||||||||||||||||||||||| ||||| ||||||    
T  51579667 gtgtgggaatcacatggacacatgtcacaattgtatttgggtgtacaagtggtacatgccacctaaggtggtct 51579594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 55281390 - 55281214
Alignment:
Q  10 ggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgagnnnnnnngtgtgtgtg 109  Q
    |||||||||||||||||||  ||||| |||||| | |||||||| ||| |||||| | | |||||   ||| |||| || |||        ||||||| |    
T  55281390 ggataatgtttcatgtacacacttttttccatacatacattgtaccactccatgtgagaatgtgtgagagacaatacatgtgactttttttgtgtgtggg 55281291  T
Q  110 gagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    | || |||| | |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  55281290 gggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 55281214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 25784014 - 25784084
Alignment:
Q  116 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||||||||| |||||||| |||||||||||    
T  25784014 acatgaatacatgtcacaattatgtgtggatgtacaagtggtacatgccacctaagatgatctatgtatca 25784084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 42179228 - 42179313
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||| || |||||| ||||||||||||||||||  |||||||| ||||||||||| ||| ||||| ||||||||||||||    
T  42179228 gtgtgtgtggggaccacatggacacatgtcacaattgtgcatgggtgtataagtggtacataccacctaaggtggtctatgtatca 42179313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 17044073 - 17044009
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  17044073 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 17044009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 20107188 - 20107116
Alignment:
Q  115 cacatgaacacatgtcacaattgtgtgtggg-tgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||    
T  20107188 cacatggacacatgtcacaattgtgtgcggggtgtacaagtggtacatgccacctaaggtggtctatgtatca 20107116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 25164583 - 25164647
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  25164583 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 25164647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 32290279 - 32290220
Alignment:
Q  127 tgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||    
T  32290279 tgtcacaattgtgtatgggtgtataagtggtacatgccacctaagatggtctatgtatca 32290220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 32525034 - 32525198
Alignment:
Q  22 atgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgagnnnnnnngtgtgtgtggagatcacatga 121  Q
    ||||||| | |||| |||||| ||||||||||||||||||| | | | |||||   |||||||||||   ||       |||||||||  || |||||      
T  32525034 atgtacacctttttttccatacacacattgtatcaccccatatgagagtgtgtgagagataataaatgacagtttttgtgtgtgtgtgtggaacacatag 32525133  T
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||| |||||||||||||||| |||| |||||||| |||||| ||||||||||||||||||||    
T  32525134 acacatatcacaattgtgtgtggatgtataagtggtatatgccacctaagatggtctatgtatca 32525198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 50498301 - 50498216
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||| || |||||| ||||||||||||||||||| |||||||| ||||||||||| | | ||||| || |||||||||||    
T  50498301 gtgtgtgtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtacatactacctaaggtgatctatgtatca 50498216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 43749162 - 43749098
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| |||| |||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  43749162 acacttgtcaaaattatgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 43749098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 3287149 - 3287090
Alignment:
Q  127 tgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||||||||    
T  3287149 tgtcaaaattgtgtgtgggtgtacaagtggtacataccatctaaggtggtttatgtatca 3287090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 48525416 - 48525332
Alignment:
Q  102 tgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||| | || |||||||||||||||||||||| | ||||| ||||||||||||| |||||| ||||  |||| |||||||||    
T  48525416 tgtgtgtagggaacacatgaacacatgtcacaattatatgtggatgtacaagtggtatatgccacctaaagtggtttatgtatca 48525332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 36851303 - 36851233
Alignment:
Q  116 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||| ||||||||||||||  || |||||||||||||||||||||||||  |||| ||||||||| ||||    
T  36851303 acatggacacatgtcacaatcatgcgtgggtgtacaagtggtacatgccacttaaggtggtctatgcatca 36851233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 39631271 - 39631314
Alignment:
Q  143 gggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  39631271 gggtgtacaagtggtacatgccacctaaggtggtctatgtatca 39631314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 39631010 - 39631053
Alignment:
Q  10 ggataatgtttcatgtacatccttttctccataaacacattgta 53  Q
    |||||||||||||||||||| ||||| |||||| ||||||||||    
T  39631010 ggataatgtttcatgtacatacttttttccatatacacattgta 39631053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 17044184 - 17044130
Alignment:
Q  10 ggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgt 64  Q
    |||||||||||||||||||  ||||| |||||| |||||||||| ||| ||||||    
T  17044184 ggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgt 17044130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 48525513 - 48525465
Alignment:
Q  5 tttatggataatgtttcatgtacatccttttctccataaacacattgta 53  Q
    |||||||||||||||||||| ||| ||||| ||| ||| ||||||||||    
T  48525513 tttatggataatgtttcatgaacaccctttcctctatacacacattgta 48525465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 10 - 184
Target Start/End: Original strand, 9521812 - 9521991
Alignment:
Q  10 ggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgag---nnnnnnngtgtgt 106  Q
    ||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||| ||||||  ||| ||||||||||||          |||| |    
T  9521812 ggataatgtttcatgtacatccttttctccatacacacattgtaccatcccatgtaaaagtgtgtaggagacaataaatatgagttttttgtgtgtgtat 9521911  T
Q  107 gtggagatcacatgaacacatgtcacaat--tgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtat 184  Q
    |||| ||||||||||| | ||||||||||  |||||||||||||||||||||||||||||| ||||| || |||||||||    
T  9521912 gtggggatcacatgaatatatgtcacaattatgtgtgtgggtgtacaagtggtacatgccacctaaggtgatctatgtat 9521991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 23916063 - 23915978
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| || |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| || |||||||||||    
T  23916063 gtgtatgtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtacatgccatctaaggtgatctatgtatca 23915978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 9045925 - 9045839
Alignment:
Q  101 gtgtgtgtggag-atcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||||| | |||| |||||| ||||| ||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||    
T  9045925 gtgtgtgtggaggaccacaagaacacttgtcaaaattgtgtgtgggtgtacaagtgatacatgccacctaaggtggtctatgtatca 9045839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 14314098 - 14314162
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  14314098 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 14314162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 29429654 - 29429590
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||| | |||| |||||||    
T  29429654 acacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaaggtagtctgtgtatca 29429590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 34792651 - 34792827
Alignment:
Q  10 ggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgagnnnnnnngtgtgtgtg 109  Q
    |||||||||||||||||||  ||||| | |||| |||||||||| ||| |||||| | | |||||   ||| |||| || ||||       ||||||       
T  34792651 ggataatgtttcatgtacacacttttttgcatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttgtgtgtgtaga 34792750  T
Q  110 gagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| |||| | |||| ||||| |||| | |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  34792751 gagaccacaaggacacttgtcaaaattatatgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 34792827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 1244679 - 1244732
Alignment:
Q  133 aattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||||| ||||||||||||||||||||  |||| ||||||||||||||    
T  1244679 aattgtgtgtggatgtacaagtggtacatgccacttaaggtggtctatgtatca 1244732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 12748288 - 12748217
Alignment:
Q  115 cacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||| ||| ||||||||||| | ||||||||||||||||||| |||||| ||||  |||| |||||||||    
T  12748288 cacatggacagatgtcacaattatatgtgggtgtacaagtggtatatgccacctaaagtggtttatgtatca 12748217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 16718044 - 16717996
Alignment:
Q  138 tgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||||||||||||||| |||||| ||||| |||| |||||||||    
T  16718044 tgtgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatca 16717996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 16718180 - 16718136
Alignment:
Q  9 tggataatgtttcatgtacatccttttctccataaacacattgta 53  Q
    |||||||||||||||| ||| ||||||||| ||| ||||||||||    
T  16718180 tggataatgtttcatgaacacccttttctctatacacacattgta 16718136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 4 - 186
Target Start/End: Original strand, 36272655 - 36272837
Alignment:
Q  4 ttttatggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgagnnnnnnngtg 103  Q
    |||| ||||||||||||||||||||  ||||| |||||| |||||||||| ||| |||||| | | |||||  |||| |||| || ||||       |||    
T  36272655 ttttttggataatgtttcatgtacacacttttttccatatacacattgtaccactccatgtgagagtgtgtgaaagacaatacatgtgagtttttttgtg 36272754  T
Q  104 tgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||| || |||| | |||| ||||| ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  36272755 tgtgtggggaccacaaggacacttgtcaaaattgtgtgtgggtgtataagtggtacatgccacctaaggtggtctatgtatca 36272837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 3121701 - 3121616
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| || |||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||| ||||||||||||||    
T  3121701 gtgtatgtggggaccacatggacacatgtcacaattgtgtatgagtgtataagtggtacatgccatctaaggtggtctatgtatca 3121616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 4 - 186
Target Start/End: Original strand, 13696959 - 13697141
Alignment:
Q  4 ttttatggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgagnnnnnnngtg 103  Q
    |||| ||||||||||||||||||||  ||||| |||||| |||||||||| ||| |||||| | | |||||   ||| |||| || |||        |||    
T  13696959 ttttttggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgactttttttgtg 13697058  T
Q  104 tgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||  | |||| | |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  13697059 tgtgggggaaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 13697141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 14945830 - 14945912
Alignment:
Q  104 tgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||| || || || ||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  14945830 tgtgtggggaccaaataaacacatgttacatttgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 14945912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 25333234 - 25333152
Alignment:
Q  102 tgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtat 184  Q
    ||||||||  ||||||||||||||||||||||| ||||||| | |||||||||||||||||| ||| ||| ||||||||||||    
T  25333234 tgtgtgtgaggatcacatgaacacatgtcacaaatgtgtgttgatgtacaagtggtacatgcgatccaaggtggtctatgtat 25333152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 33300070 - 33299985
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||| || |||||||||||||||||||||||| | |||||||| || ||||||||||||  |||| ||||||||||||||    
T  33300070 gtgtgtgtggggaccacatgaacacatgtcacaattgtatatgggtgtataaatggtacatgccacttaaggtggtctatgtatca 33299985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 32599248 - 32599424
Alignment:
Q  10 ggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgagnnnnnnngtgtgtgtg 109  Q
    |||||||||||||||||||  ||||| |||||| |||||||||| ||| |||||| | | |||||   ||| |||| || ||||       |||||||      
T  32599248 ggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgacagacaatacatgtgagtttttttgtgtgtgga 32599347  T
Q  110 gagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    | || |||| | |||| ||||| |||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  32599348 gggaccacaaggacacttgtcaaaattatgtgtggatgtacaagtggtacatgccacctaaggtggtctatgtatca 32599424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 14242626 - 14242691
Alignment:
Q  121 aacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||| ||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  14242626 aacacttgtcaaaattgtgtgtgggtgtacaggtggtacataccacctaagatggtctatgtatca 14242691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 17823763 - 17823585
Alignment:
Q  8 atggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgagnnnnnnngtgtgtg 107  Q
    |||||||||||||||||||||  ||||| |||||| |||||||||| ||| |||||| | | |||||   ||| |||| || ||||       |||||||    
T  17823763 atggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtg 17823664  T
Q  108 tggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
     || || |||| | |||| | ||| |||||| |||||||||||||||| ||||| ||||||||| |||| |||||||||    
T  17823663 gggggaccacaaggacacttatcaaaattgtatgtgggtgtacaagtgatacataccatctaaggtggtttatgtatca 17823585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 23860255 - 23860340
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||| || ||||||| |||||| ||||| ||| ||||||| || |||||||||||||||||| ||||| ||||||||||||||    
T  23860255 gtgtgtggggggatcacaagaacacttgtcaaaatagtgtgtgagtatacaagtggtacatgccacctaaggtggtctatgtatca 23860340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 24475792 - 24475877
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||| ||  ||||| ||||||||||||||||||| |||||||| ||||| ||||| ||| ||||| ||||||||||||||    
T  24475792 gtgtgtgtggggactacatggacacatgtcacaattgtgtatgggtgtataagtgatacataccacctaaggtggtctatgtatca 24475877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 36709308 - 36709367
Alignment:
Q  127 tgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  36709308 tgtcaaaattgtgtgtgggtgtataagtggtacataccacctaagatggtctatgtatca 36709367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 4434694 - 4434766
Alignment:
Q  114 tcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||| |||||||||||||| ||||||||  |||||||||||||||||||  |||| |||||||| |||||    
T  4434694 tcacatggacacatgtcacaatagtgtgtggaagtacaagtggtacatgccacataaggtggtctatatatca 4434766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 40095333 - 40095269
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| |||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  40095333 acacttgtcaaaattgtatgtggatgtacaagtggtacatgtcatctaaggtggtctatgtatca 40095269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 40216499 - 40216415
Alignment:
Q  102 tgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||| | || |||||| ||||||||||||||| | ||||||||||||||||||| ||  |||||||| |||| ||| |||||    
T  40216499 tgtgtgtagggaccacatggacacatgtcacaattatatgtgggtgtacaagtggtatatatcatctaaggtggtttatatatca 40216415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 42061322 - 42061407
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||| || || |||| | |||| ||||| |||||| |||||||||||||||||||||||||| | ||  || |||||||||||    
T  42061322 gtgtgtggggggaccacaaggacacttgtcaaaattgtatgtgggtgtacaagtggtacatgccacccaaagtgctctatgtatca 42061407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 33555475 - 33555539
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| ||||||||||  |||||||||||||||||||||  |||| || |||||||||||    
T  33555475 acacttgtcaaaattgtgtgtaagtgtacaagtggtacatgccacttaaggtgatctatgtatca 33555539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 14242524 - 14242578
Alignment:
Q  10 ggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgt 64  Q
    |||||||||||||||||||  ||||| |||||| |||||||||| ||| ||||||    
T  14242524 ggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgt 14242578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 33555362 - 33555416
Alignment:
Q  10 ggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgt 64  Q
    |||||||||||||||||||  ||||| |||||| |||||||||| ||| ||||||    
T  33555362 ggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgt 33555416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 5563027 - 5562942
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||||||| |||||  |||||||||| |||| | | ||  |||| || |||||||||||| |||| || ||||||||||||    
T  5563027 gtgtgtgtggagaccacatcgacacatgtcaaaattatatatgaatgtataaatggtacatgccacctaaaatagtctatgtatca 5562942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 23004846 - 23004762
Alignment:
Q  102 tgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  23004846 tgtgtgtggggaccacatgaatacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 23004762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 33288223 - 33288138
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||  || |||||  |||||| ||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||    
T  33288223 gtgtgtgtgaggaccacatagacacatatcacaattgtgtgtgggtgtacaagtggtacataccacctaaggtggtctatgtatca 33288138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 184
Target Start/End: Complemental strand, 54713706 - 54713532
Alignment:
Q  10 ggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgagnnnnnnngtgtgtgtg 109  Q
    ||||||| ||||||||||| |||||| |||| | | ||||| ||| ||||||||| | | |||||   ||| ||||||||||||       || ||||||    
T  54713706 ggataatatttcatgtacacccttttttccacacatacattatataaccccatgtgagagtgtgtgagagacaataaatatgagttcttttgtatgtgtg 54713607  T
Q  110 gagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtat 184  Q
    | ||| ||||| |||||||||| |||| ||||||| ||| |||||||||||||||| ||||  ||||||||||||    
T  54713606 gggattacatggacacatgtcataattatgtgtggatgttcaagtggtacatgccacctaacgtggtctatgtat 54713532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 9271180 - 9271116
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9271180 acacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaaggtggtctatgtatca 9271116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 38247868 - 38247804
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  38247868 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 38247804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 50989273 - 50989209
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  50989273 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 50989209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 51092405 - 51092341
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  51092405 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 51092341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 8330697 - 8330768
Alignment:
Q  115 cacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||| ||| || |||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||    
T  8330697 cacatggacatatatcacaattgtgtgtgaatgtacaagtggtacatgccatctaaggtggtctatgtatca 8330768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 46135597 - 46135533
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||||||||||| ||| ||||||||| || |||||||||| |||||||||||||||||||    
T  46135597 acacatgtcacaattgtatgtaggtgtacaaatgatacatgccatttaagatggtctatgtatca 46135533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 103 - 186
Target Start/End: Original strand, 39947250 - 39947333
Alignment:
Q  103 gtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||| |||||||||| |||||| |||||||||| |||||||||| |||||||||||| ||  |||| |||||||| |||||    
T  39947250 gtgtgtgaagatcacatggacacatatcacaattgtatgtgggtgtataagtggtacatgtcacttaaggtggtctatatatca 39947333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 8496776 - 8496710
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatcaat 188  Q
    |||| ||||| |||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  8496776 acacttgtcaaaattgtatgtgggtggacaagtggtacatgccacctaaggtggtctatgtatcaat 8496710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 12224094 - 12224179
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||| || || |||| | |||| ||||| |||||||||||||||||||| |||||||||||| ||||| |||| |||||||||    
T  12224094 gtgtgtgaggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaaatggtacatgccacctaaggtggtttatgtatca 12224179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 36674611 - 36674695
Alignment:
Q  102 tgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||| | ||||||||| ||||||||||||||| | |||| |||||||||||||| ||| || ||||| |||| |||||||||    
T  36674611 tgtgtgtagtgatcacatggacacatgtcacaattatatgtgagtgtacaagtggtatatgtcacctaaggtggtttatgtatca 36674695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 48034921 - 48034985
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| |||||| ||||||||||||||||||||||| || ||||| |||| |||||||||    
T  48034921 acacttgtcaaaattgtatgtgggtgtacaagtggtacatgtcacctaaggtggtttatgtatca 48034985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 46135707 - 46135657
Alignment:
Q  10 ggataatgtttcatgtacatccttttctccataaacacattgtatcacccc 60  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||| ||||||    
T  46135707 ggataatgtttcatgaacatcattttctccatacacacattgtaccacccc 46135657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 29915090 - 29915135
Alignment:
Q  141 gtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||||||||||| ||||||  |||| ||||||||||||||    
T  29915090 gtgggtgtacaagtggtatatgccacataaggtggtctatgtatca 29915135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 29964243 - 29964288
Alignment:
Q  141 gtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||||||||||| ||||||  |||| ||||||||||||||    
T  29964243 gtgggtgtacaagtggtatatgccacataaggtggtctatgtatca 29964288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 36674517 - 36674562
Alignment:
Q  8 atggataatgtttcatgtacatccttttctccataaacacattgta 53  Q
    |||||| |||||||||| ||||||||||||| ||| ||||||||||    
T  36674517 atggattatgtttcatgaacatccttttctctatacacacattgta 36674562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 54413511 - 54413572
Alignment:
Q  123 cacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtat 184  Q
    |||||||| |||||||||||||||||||||||| ||  || ||  |||| ||||||||||||    
T  54413511 cacatgtcgcaattgtgtgtgggtgtacaagtgttagttgtcagttaaggtggtctatgtat 54413572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 2599622 - 2599537
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||| ||||||||||||||    
T  2599622 gtgtatgtggggaccacatgaacacatgtcacaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatca 2599537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 41075693 - 41075773
Alignment:
Q  106 tgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||| || |||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||||    
T  41075693 tgtggggaccacatgaacacatgtcacaattgtatgtgggtgtacaagtggtacatgtcacctaaggtggtctatgtatca 41075773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 8368483 - 8368545
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtat 184  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  8368483 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtat 8368545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 28898086 - 28898001
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||| || |||||| ||||||||||||||||||| |||||||| |||||||| |||||| ||||| ||||||||||||||    
T  28898086 gtgtgtgtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtatatgccacctaaggtggtctatgtatca 28898001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 10391397 - 10391481
Alignment:
Q  102 tgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||| || |||||| ||||||||||||||||||| |||||||| |||||| |||||||| |||||||| |||||||||||    
T  10391397 tgtgtgtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggcacatgccacctaagatgatctatgtatca 10391481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 31774810 - 31774730
Alignment:
Q  106 tgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||| || |||||||||||||||||||||||| |||| |||||||||||||||||| || ||||| ||||||||||||||    
T  31774810 tgtggggaccacatgaacacatgtcacaattgtatgtgagtgtacaagtggtacatgtcacctaaggtggtctatgtatca 31774730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 45413629 - 45413714
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||| || || ||| ||||||||||||||||||| ||| |||| ||||||||||||||| ||||| ||||||||||||||    
T  45413629 gtgtgtgtggggaccatatggacacatgtcacaattgtgtatggatgtataagtggtacatgccacctaaggtggtctatgtatca 45413714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 1993732 - 1993816
Alignment:
Q  102 tgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||| ||||| |||| | |||| ||||| ||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||    
T  1993732 tgtgtggggagaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtgatacatgccacctaaggtggtctatgtatca 1993816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 16465724 - 16465788
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||||||||||| ||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  16465724 acacatgtcacaattgtatgtgggtatacaagtggtacatgccgtctaaggtggtctatgtatca 16465788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 43066016 - 43066080
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  43066016 acacttgtcaaaattgtgtgtggatgtacaagtggtacatgccacctaaggtggtctatgtatca 43066080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 11904930 - 11904859
Alignment:
Q  115 cacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| |||||| ||||| |||| |||||||||    
T  11904930 cacatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatca 11904859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 14342312 - 14342365
Alignment:
Q  133 aattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  14342312 aattgtgtgtgggtgtataagtggtacatgccacctaaggtggtctatgtatca 14342365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 27497263 - 27497194
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaa 170  Q
    |||||| |||| | |||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||||    
T  27497263 gtgtgtatggaaaccacatgaacacatgtcgcaattgtctgtggatgtacaagtggtacatgccacctaa 27497194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 10592067 - 10592010
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggta 158  Q
    |||||||| |||| |||||| ||||||||||||||| | |||||||||||||||||||    
T  10592067 gtgtgtgtagagaccacatggacacatgtcacaattatatgtgggtgtacaagtggta 10592010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 31523608 - 31523688
Alignment:
Q  106 tgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||||||||| |||| | |||||||| | | | | |||||||||| |||||| ||||||||||||||||| |||||    
T  31523608 tgtggagatcacatggacacttatcacaattatatatagatgtacaagtgatacatgtcatctaagatggtctatctatca 31523688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 44081157 - 44081073
Alignment:
Q  102 tgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||  ||||| ||  ||||||||||||||  |||||| ||||||| || ||||||||||||||| |||| |||||||||    
T  44081157 tgtgtgtgggaatcacgtgggcacatgtcacaattacgtgtggatgtacaaatgatacatgccatctaaggtggtgtatgtatca 44081073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 4077086 - 4077137
Alignment:
Q  135 ttgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||||| |||||||||||||||||| ||||| |||||||| |||||    
T  4077086 ttgtgtgtgggtatacaagtggtacatgccacctaaggtggtctatatatca 4077137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 45502752 - 45502670
Alignment:
Q  102 tgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtat 184  Q
    ||||| |||||| |||||| ||||||||||||||||| | ||  |||||||||||||||| |||  |||| |||| |||||||    
T  45502752 tgtgtatggagaccacatggacacatgtcacaattgtatatgaatgtacaagtggtacataccacttaaggtggtttatgtat 45502670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 35200631 - 35200562
Alignment:
Q  117 catgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||||||||||||| | |||||||||||||||  || |||||| ||||| |||| |||||||||    
T  35200631 catggacacatgtcacaattatatgtgggtgtacaagtaatatatgccacctaaggtggtttatgtatca 35200562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 12142147 - 12142087
Alignment:
Q  126 atgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||||| | ||||| ||||||||||||| |||||| ||||| |||| |||||||||    
T  12142147 atgtcacaattatatgtggatgtacaagtggtatatgccacctaaggtggtttatgtatca 12142087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 14342187 - 14342241
Alignment:
Q  10 ggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgt 64  Q
    |||||||||||||||||||  ||||| |||||| |||||||||| ||| ||||||    
T  14342187 ggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgt 14342241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 44077675 - 44077642
Alignment:
Q  151 aagtggtacatgccatctaagatggtctatgtat 184  Q
    |||||||||||||||||||||||| |||||||||    
T  44077675 aagtggtacatgccatctaagatgatctatgtat 44077642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 46845747 - 46845832
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| || |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||    
T  46845747 gtgtatgtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtacatgccatctaaggtggtctatgtatca 46845832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 2403017 - 2403101
Alignment:
Q  102 tgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||| || || |||| |||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2403017 tgtgtggggggaccacaagaacacttttcaaaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 2403101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 526990 - 527075
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| || |||||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||| ||||||||||||||    
T  526990 gtgtatgtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatca 527075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 39858438 - 39858353
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||| || |||||| ||||||||||||||||||| |||||||| |||||||| |||||| ||||| ||||||||||||||    
T  39858438 gtgtgtgtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtatatgccacctaaggtggtctatgtatca 39858353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 29637322 - 29637386
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29637322 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatca 29637386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 1673428 - 1673375
Alignment:
Q  133 aattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1673428 aattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatca 1673375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 49430555 - 49430640
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||||||| || ||| ||||||||||||||||||| | | |||| ||||||||||||||| ||||| ||||||||||||||    
T  49430555 gtgtgtgtggagaccagatggacacatgtcacaattgtgtattgatgtataagtggtacatgccacctaaggtggtctatgtatca 49430640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 1995134 - 1994959
Alignment:
Q  10 ggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgagnnnnnnngtgtgtgtg 109  Q
    |||||||||||||||||||  ||||| |||||| |||||||||| ||| |||||| | | |||||   ||| |||| || ||||        ||||||||    
T  1995134 ggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttt--tgtgtgtg 1995037  T
Q  110 ga-gatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    || || ||||   |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  1995036 gaggaccacaaagacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 1994959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 6487798 - 6487734
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||  ||||||||||||||    
T  6487798 acacatgtcacaattgtgtgtggatgtacaagtggtacatgccacctaaattggtctatgtatca 6487734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 26041060 - 26040976
Alignment:
Q  102 tgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||| || ||| || ||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| | |||||||    
T  26041060 tgtgtgtggggaccacgtggacacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaaggtggtttgtgtatca 26040976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 27325751 - 27325804
Alignment:
Q  133 aattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  27325751 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 27325804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 33502615 - 33502700
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||||||| ||  |||||| ||||||||||||  ||| ||||||||||||||||||| |||||||  ||||||||||||||    
T  33502615 gtgtgtgtggagaccatgtgaacatatgtcacaattgcatgtaggtgtacaagtggtacatgtcatctaatgtggtctatgtatca 33502700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 44797589 - 44797642
Alignment:
Q  133 aattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  44797589 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 44797642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 7178203 - 7178287
Alignment:
Q  102 tgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||| |||| |||||  |||| |||||||||||| ||||||||||||| ||||||||| || ||||| ||||||||||||||    
T  7178203 tgtgtgtcgagaccacatagacacttgtcacaattgtatgtgggtgtacaaatggtacatgtcacctaaggtggtctatgtatca 7178287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 13276555 - 13276640
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||||  | |||||| |||||||||| |||||||| || ||||| ||||||||||| ||| ||||| ||||||||||||||    
T  13276555 gtgtgtgtgggtaccacatggacacatgtcataattgtgtatgagtgtataagtggtacataccacctaaggtggtctatgtatca 13276640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 19989327 - 19989246
Alignment:
Q  104 tgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatc 185  Q
    |||||||| | |||||| |||||||||||| |||| ||||| ||||||||||||| ||| |||||||| |||| ||||||||    
T  19989327 tgtgtggaaaccacatggacacatgtcacacttgtatgtggatgtacaagtggtatatgtcatctaaggtggtttatgtatc 19989246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 29731279 - 29731194
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||| | || |||||| ||||||||||||||| | ||||||||||| ||||||| |||||| ||||| |||| |||||||||    
T  29731279 gtgtgtgtagggaccacatggacacatgtcacaattatatgtgggtgtactagtggtatatgccacctaaggtggtttatgtatca 29731194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 32267577 - 32267641
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| |||||||||||||||||||| | ||||||||||  |||||||||||||||||||    
T  32267577 acacttgtcaaaattgtgtgtgggtgtacaaattgtacatgccacttaagatggtctatgtatca 32267641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 15225082 - 15225167
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||| || ||  || ||| ||||||||||||  |||||||||| |||| |||||||||| ||||| ||||||||||||||    
T  15225082 gtgtgtgtggggaccatgtggacatatgtcacaattgcatgtgggtgtataagttgtacatgccacctaaggtggtctatgtatca 15225167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 40314183 - 40314098
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||| || |||||| ||||||||||||||||||| ||| |||| || |||||||| | | ||||| |||| |||||||||    
T  40314183 gtgtgtgtggggaccacatggacacatgtcacaattgtgtatggatgtataaatggtacatactacctaaggtggtttatgtatca 40314098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 40030890 - 40030844
Alignment:
Q  140 tgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||||    
T  40030890 tgtgggtgtacaagtggtacatgctacctaaggtggtctatgtatca 40030844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 40294845 - 40294907
Alignment:
Q  124 acatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||||||||||| | |||| ||||||||||| ||||| ||||  ||||||||||||||    
T  40294845 acatgtcacaattgtgtataggtggacaagtggtacgtgccacctaaagtggtctatgtatca 40294907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 47571655 - 47571739
Alignment:
Q  102 tgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||| | || |||||| ||||||||||||||| | ||||||||||||||||| | ||| || ||||| |||| ||| |||||    
T  47571655 tgtgtgtagggaccacatggacacatgtcacaattatatgtgggtgtacaagtggcatatgtcacctaaggtggtttatatatca 47571739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 29731374 - 29731323
Alignment:
Q  6 ttatggataatgtttcatgtacatccttttctccataaacacattgtatcac 57  Q
    |||| |||||||||||||| ||| ||||||||| ||| ||||||||||||||    
T  29731374 ttatagataatgtttcatgaacacccttttctctatacacacattgtatcac 29731323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 12907642 - 12907684
Alignment:
Q  102 tgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgg 144  Q
    ||||||||| || ||||| ||||||||||||||||||||||||    
T  12907642 tgtgtgtggggaccacataaacacatgtcacaattgtgtgtgg 12907684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 27325627 - 27325681
Alignment:
Q  10 ggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgt 64  Q
    |||||||||||||||||||  ||||| |||||| |||||||||| ||| ||||||    
T  27325627 ggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgt 27325681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 13988429 - 13988253
Alignment:
Q  10 ggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgagnnnnnnngtgtgtgtg 109  Q
    |||||||||||||||||||  ||||| |||||| |||||||||| ||| |||||| | | |||||   ||| |||| || |||        ||||||| |    
T  13988429 ggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgactttttttgtgtgtggg 13988330  T
Q  110 gagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    | || |||| | |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  13988329 gggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 13988253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 15285420 - 15285335
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| || |||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||| ||||||||||||||    
T  15285420 gtgtatgtggggaccacatggacacatgtcacaattgtgtatgagtgtataagtggtacatgccatctaaggtggtctatgtatca 15285335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 43100299 - 43100384
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||| |||| |||||| ||||||||||||||| | ||||||||||||||||||| || ||| |||||||||| |||||||||    
T  43100299 gtgtgtgtagagaccacatggacacatgtcacaattatatgtgggtgtacaagtggtatataccacctaagatggtttatgtatca 43100384  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 36890447 - 36890383
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  36890447 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 36890383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 33687738 - 33687653
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||| ||||||||||| ||||||||||||||| | | ||| ||||||||||||| |||||| |||||||| | |||||||||    
T  33687738 gtgtgtgtagagatcacatggacacatgtcacaattatatatggatgtacaagtggtatatgccacctaagatgatttatgtatca 33687653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 11247374 - 11247198
Alignment:
Q  10 ggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgagnnnnnnngtgtgtgtg 109  Q
    |||||||||||||||||||  ||||| |||||| |||||||||| ||| |||||| | | |||||   ||| |||| || ||||       ||||||  |    
T  11247374 ggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtagg 11247275  T
Q  110 gagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    | |||||||   |||  ||||| |||||||||||| ||||||||| ||| |||||||||||| | ||||||||||||    
T  11247274 gggatcacaaagacatttgtcaaaattgtgtgtggatgtacaagtagtatatgccatctaaggtagtctatgtatca 11247198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 6043095 - 6043012
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||||| | |||||||||| ||||||||||| | | |||||||||||||||||||| |  |||||||| || |||||||||    
T  6043095 gtgtgtgtggatagcacatgaacatatgtcacaattatatatgggtgtacaagtggtacatac--tctaagattgtttatgtatca 6043012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 35906070 - 35906000
Alignment:
Q  116 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||| ||||||||||||||||| | |||||||| ||||| ||||| ||| ||||| ||||||||||||||    
T  35906070 acatggacacatgtcacaattgtatatgggtgtataagtgatacataccacctaaggtggtctatgtatca 35906000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 8378405 - 8378350
Alignment:
Q  131 acaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||||||| ||||||| ||||||||| |||||||| ||||||||||||||    
T  8378405 acaactgtgtgtggatgtacaaatggtacatgtcatctaaggtggtctatgtatca 8378350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 12248350 - 12248279
Alignment:
Q  115 cacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||| ||||||||||||||| | ||||| ||||||||||||| |||||| ||||| || | |||||||||    
T  12248350 cacatggacacatgtcacaattatatgtggatgtacaagtggtatatgccacctaaggtgatttatgtatca 12248279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 20151453 - 20151390
Alignment:
Q  123 cacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||| |||| ||||||||||| ||||||||| |||| | ||||  ||||||||||||||    
T  20151453 cacatgtcataattatgtgtgggtgttcaagtggtatatgctacctaaagtggtctatgtatca 20151390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 1447853 - 1447907
Alignment:
Q  116 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaa 170  Q
    ||||| ||| |||||||||||||| |||| |||| ||||||||||||||| ||||    
T  1447853 acatggacatatgtcacaattgtgcgtggatgtataagtggtacatgccacctaa 1447907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 43100207 - 43100251
Alignment:
Q  9 tggataatgtttcatgtacatccttttctccataaacacattgta 53  Q
    |||||||||||||||| ||| ||||||||| ||| ||||||||||    
T  43100207 tggataatgtttcatgaacacccttttctctatacacacattgta 43100251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 31741134 - 31741049
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||| || |||||  ||||||||||||||||||| |||||||| ||||||||||||||| ||||| ||||||||||||||    
T  31741134 gtgtgtgtggggagcacatagacacatgtcacaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatca 31741049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 42974469 - 42974554
Alignment:
Q  101 gtgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||||||||| || || ||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| |||| |||||||||    
T  42974469 gtgtgtgtggggaccatatgaacacatgtcacaattgtatgtgggtgtataagtggtacatgccacctaaggtggtttatgtatca 42974554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 38754987 - 38755071
Alignment:
Q  102 tgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||| ||||||||| |||||||||| |||| ||| ||||||| |||||||||||||||| ||||| ||||||||||||||    
T  38754987 tgtgtgtggggatcacatggacacatgtcataattatgtatgggtgttcaagtggtacatgccacctaaggtggtctatgtatca 38755071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 38349551 - 38349635
Alignment:
Q  102 tgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||| | || |||||| ||||||||||||||| | ||||||||||||||||||| |||||| |||||||||| |||||||||    
T  38349551 tgtgtgtagggaacacatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaagatggtttatgtatca 38349635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 185
Target Start/End: Complemental strand, 11752687 - 11752604
Alignment:
Q  102 tgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatc 185  Q
    ||||||||| || ||| |||||||||||||||||| | ||| |||||||||||| ||||||||| ||||| |||||||||||||    
T  11752687 tgtgtgtggggaccacgtgaacacatgtcacaattatatgtaggtgtacaagtgatacatgccacctaaggtggtctatgtatc 11752604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 46576242 - 46576418
Alignment:
Q  10 ggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgagnnnnnnngtgtgtgtg 109  Q
    |||||||||||||||||||  ||||| |||||| |||||||||| ||| |||||| | | |||||   ||| |||| || |||        ||||||| |    
T  46576242 ggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgactttttttgtgtgtggg 46576341  T
Q  110 gagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |  | |||| | |||| ||| | ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  46576342 ggaaccacaaggacacttgttaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 46576418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 185
Target Start/End: Complemental strand, 33496681 - 33496506
Alignment:
Q  10 ggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgagnnnnnnngtgtgtgtg 109  Q
    |||||||||||||||||||  ||||| |||||| ||||||| || ||| |||||| | | |||||   ||| |||| |||||||       ||||||| |    
T  33496681 ggataatgtttcatgtacacacttttttccatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagtttttttgtgtgtggg 33496582  T
Q  110 gagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatc 185  Q
    | |||||||   |||| ||||| |||| | ||||||||||||||||||||||| || ||||| |||||||||||||    
T  33496581 gggatcacaaagacacttgtcaaaattatatgtgggtgtacaagtggtacatgtcacctaaggtggtctatgtatc 33496506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 28713767 - 28713683
Alignment:
Q  102 tgtgtgtggagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||| | || |||||| ||||||||||||||| | ||||||||||||||||||| |||||| ||||| |||| |||||||||    
T  28713767 tgtgtgtagggaacacatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatca 28713683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 47480125 - 47480188
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    ||||||||||||||||| | ||||||||||| |||||||||||| ||||| ||||||||||||||    
T  47480125 acacatgtcacaattgtat-tgggtgtacaaatggtacatgccacctaaggtggtctatgtatca 47480188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 48460729 - 48460665
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||| |||||| ||||| ||||||| |||||||||||| ||||| ||||||||||||||    
T  48460729 acacttgtcaaaattgtatgtggatgtacaaatggtacatgccacctaaggtggtctatgtatca 48460665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 30922710 - 30922886
Alignment:
Q  10 ggataatgtttcatgtacatccttttctccataaacacattgtatcaccccatgtaaaattgtgtataagataataaatatgagnnnnnnngtgtgtgtg 109  Q
    |||||||||||||||||||| ||||| |||||| |||||||||| ||| |||||| | | |||||   ||| |||| || ||||       ||||||| |    
T  30922710 ggataatgtttcatgtacatacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtggg 30922809  T
Q  110 gagatcacatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    | ||  ||| | |||| ||||| |||| ||||||  |||||| ||||||||| ||| ||||| || |||||||||||    
T  30922810 gggactacaaggacacttgtcaaaattatgtgtgaatgtacatgtggtacataccacctaaggtgatctatgtatca 30922886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 37536422 - 37536491
Alignment:
Q  117 catgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 186  Q
    |||| ||||||||||||||| | |||||||||||| ||| || |||||| |||||||| | |||||||||    
T  37536422 catggacacatgtcacaattatatgtgggtgtacatgtgatatatgccacctaagatgatttatgtatca 37536491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 3165 - 3230
Alignment:
Q  122 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtc-tatgtatca 186  Q
    |||| ||||| |||||| ||||||||||||| ||||||||| |||||||||||||| |||||||||    
T  3165 acacttgtcaaaattgtatgtgggtgtacaaatggtacatgtcatctaagatggtcttatgtatca 3230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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