View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16735_high_37 (Length: 410)

Name: NF16735_high_37
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16735_high_37
NF16735_high_37
[»] chr1 (2 HSPs)
chr1 (16-392)||(27257038-27257417)
chr1 (73-125)||(4433202-4433254)
[»] chr5 (1 HSPs)
chr5 (16-157)||(28705223-28705364)
[»] chr4 (3 HSPs)
chr4 (16-194)||(26159433-26159615)
chr4 (256-331)||(9365511-9365582)
chr4 (189-239)||(26159185-26159235)
[»] chr7 (2 HSPs)
chr7 (16-157)||(26636161-26636302)
chr7 (189-239)||(26636606-26636656)
[»] chr3 (3 HSPs)
chr3 (16-135)||(41474709-41474827)
chr3 (189-239)||(41475048-41475098)
chr3 (298-331)||(52282110-52282143)
[»] chr2 (1 HSPs)
chr2 (16-135)||(22559917-22560035)
[»] chr8 (1 HSPs)
chr8 (256-331)||(37065101-37065172)


Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 27257417 - 27257038
Alignment:
Q  16 attatacttactcaaaggctcacaatagtttctaaattaactcggtgtgtgcacccttttctctcaatctcacactattattgttttcaatcattaaaaa 115  Q
    |||||| ||| ||||||||| |||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27257417 attatatttaatcaaaggcttacaatagtttctaagttaactcagtgtgtgcacccttttctcccaatctcacactattattgttttcaatcattaaaaa 27257318  T
Q  116 actcagattgcatacatgatgcatcacgaattattcttgtttacatttccatattctctcg--gttaattcctcaaattgaattgctgccaattcctggt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  27257317 actcagattgcatacatgatgcatcacgaattattcttgtttacatctccatattctctcttagttaattcctcaaattgaattgctgccaattcctggt 27257218  T
Q  214 gtacaaacaaaaaatcaagagttatccatcccattccatcccatatggattgcaattttcatgagactgatcccaatttgaggaaggaagctagtgaaac 313  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27257217 gtacaaacaaaaaatcaagagttatccatcccatcccatcccatatggattgcaattttcatgagactgatcccaatttgaggaaggaagctagtgaaac 27257118  T
Q  314 tagggtattttagatgag-nnnnnnnnnactaccgaagggatttttggtgtcgaaattgaaacaagtgagaagaaacatc 392  Q
    ||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27257117 tagggtattttagatgagttttttttttactaccgaagggatttttggtgtcgaaattgaaacaagtgagaagaaacatc 27257038  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 4433202 - 4433254
Alignment:
Q  73 tttctctcaatctcacactattattgttttcaatcattaaaaaactcagattg 125  Q
    ||||| |||||| ||||||||||||||||| ||| |||| |||||||| ||||    
T  4433202 tttctttcaatcacacactattattgttttaaatgattacaaaactcaaattg 4433254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 28705223 - 28705364
Alignment:
Q  16 attatacttactcaaaggctcacaatagtttctaaattaactcggtgtgtgcacccttttctctcaatctcacactattattgttttcaatcattaaaaa 115  Q
    |||||| ||| |||||||||||||||||||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  28705223 attatatttaatcaaaggctcacaatagtttctaatttaactcattgtgtgcacccttt-ctctcaatctcacactattattgttttcagtcattcaaaa 28705321  T
Q  116 actcagattgcatacatgat-gcatcacgaattattcttgttt 157  Q
    |||||||| ||||| ||||| |||||| || ||||||||||||    
T  28705322 actcagatcgcatatatgatcgcatcatgatttattcttgttt 28705364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 26159615 - 26159433
Alignment:
Q  16 attatacttactcaaaggctcacaatagtttctaaattaactcggtgtgtgcacccttttctctcaatctcacactattattgttttcaatcattaaaaa 115  Q
    |||||| ||| |||||||||||||||||||||||| |||||||   ||||||||||||| ||| |||||||||||||||||||| ||| |||||| ||||    
T  26159615 attatatttaatcaaaggctcacaatagtttctaatttaactcaccgtgtgcacccttt-ctcacaatctcacactattattgtgttcgatcattcaaaa 26159517  T
Q  116 actcagattgcatacatgat-gcatcacgaattattcttgtttacatttcca--tattctctc--ggttaattcctcaaattga 194  Q
    |||||||||||||| ||||| |||||| || |||||||||||| ||| || |  |||||||||  ||||||||||||| |||||    
T  26159516 actcagattgcatatatgatcgcatcatgatttattcttgtttgcatctcgatctattctctcttggttaattcctcacattga 26159433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 331
Target Start/End: Complemental strand, 9365582 - 9365511
Alignment:
Q  256 atatggattgcaattttcatgagactgatcccaatttgaggaaggaagctagtgaaactagggtattttagatgag 331  Q
    ||||||||||||| ||||||||||   ||||||||| ||||||     ||||||||||||||||||||||||||||    
T  9365582 atatggattgcaaatttcatgagatcaatcccaattagaggaaa----ctagtgaaactagggtattttagatgag 9365511  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 26159235 - 26159185
Alignment:
Q  189 aattgaattgctgccaattcctggtgtacaaacaaaaaatcaagagttatc 239  Q
    |||||||||||| |||||||||||  ||||| |||||| ||||||||||||    
T  26159235 aattgaattgctaccaattcctggcatacaagcaaaaagtcaagagttatc 26159185  T

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Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 26636161 - 26636302
Alignment:
Q  16 attatacttactcaaaggctcacaatagtttctaaattaactcggtgtgtgcacccttttctctcaatctcacactattattgttttcaatcattaaaaa 115  Q
    |||||| ||| |||||||||||||||||||||||| |||||||   || |||||||||| |||||||||||||||||||||| |||||| ||||| ||||    
T  26636161 attatatttaatcaaaggctcacaatagtttctaatttaactcatcgtatgcacccttt-ctctcaatctcacactattattattttcagtcattcaaaa 26636259  T
Q  116 actcagattgcatacatgat-gcatcacgaattattcttgttt 157  Q
    |||||||||||||| ||||| |||||| || ||||||||||||    
T  26636260 actcagattgcatatatgatcgcatcatgatttattcttgttt 26636302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 26636606 - 26636656
Alignment:
Q  189 aattgaattgctgccaattcctggtgtacaaacaaaaaatcaagagttatc 239  Q
    |||||||||| | |||||||||||  ||||||||||||||||||| |||||    
T  26636606 aattgaattgtttccaattcctggcatacaaacaaaaaatcaagatttatc 26636656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 41474709 - 41474827
Alignment:
Q  16 attatacttactcaaaggctcacaatagtttctaaattaactcggtgtgtgcacccttttctctcaatctcacactattattgttttcaatcattaaaaa 115  Q
    |||||| ||| |||||||||||||||||||||||| |||||||   ||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  41474709 attatatttaatcaaaggctcacaatagtttctaatttaactcatcgtgtgcacccttt-ctctcaatctcacactattattgttttcagtcattcaaaa 41474807  T
Q  116 actcagattgcatacatgat 135  Q
    |||||||| ||||| |||||    
T  41474808 actcagatcgcatatatgat 41474827  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 41475048 - 41475098
Alignment:
Q  189 aattgaattgctgccaattcctggtgtacaaacaaaaaatcaagagttatc 239  Q
    |||||||||| | |||||||||||  ||||||||||||||||||| |||||    
T  41475048 aattgaattgttaccaattcctggcatacaaacaaaaaatcaagatttatc 41475098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 331
Target Start/End: Complemental strand, 52282143 - 52282110
Alignment:
Q  298 aggaagctagtgaaactagggtattttagatgag 331  Q
    ||||| ||||||||||||||||||||||||||||    
T  52282143 aggaaactagtgaaactagggtattttagatgag 52282110  T

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Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 22559917 - 22560035
Alignment:
Q  16 attatacttactcaaaggctcacaatagtttctaaattaactcggtgtgtgcacccttttctctcaatctcacactattattgttttcaatcattaaaaa 115  Q
    |||||| ||| |||||||||||  ||||||||||| |||||||   ||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  22559917 attatatttaatcaaaggctcatgatagtttctaatttaactcatcgtgtgcacccttt-ctctcaatctcacactattattgttttcagtcattcaaaa 22560015  T
Q  116 actcagattgcatacatgat 135  Q
    |||||||| ||||| |||||    
T  22560016 actcagatcgcatatatgat 22560035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 37065101 - 37065172
Alignment:
Q  256 atatggattgcaattttcatgagactgatcccaatttgaggaaggaagctagtgaaactagggtattttagatgag 331  Q
    ||||||||||||| ||||||||||   ||||||||| ||||||     ||||||||||||||||||||||||||||    
T  37065101 atatggattgcaaatttcatgagatcaatcccaattagaggaaa----ctagtgaaactagggtattttagatgag 37065172  T

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