View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_high_53 (Length: 355)
Name: NF16735_high_53
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_high_53 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 19577685 - 19577342
Alignment:
| Q |
1 |
tccatatttgattatttgtgaagagcgtgtgatgtgatacaatattggtgattgtgaatcaatgaaatggatttgaatgttggttatatagtgcaaagta |
100 |
Q |
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| T |
19577685 |
tccatatttgattatttgtgaagagcgtgtgatgtgatacaatattggtgattgtgaatcaatgaaatggatttgaatgttggttatatagtgcaaagta |
19577586 |
T |
|
| Q |
101 |
catccgtatcagtttaaattttttgagcagttggttaaccaattgttattttaacttgtaacttaaatatgctgaacgttgaagttagatgcaatatttt |
200 |
Q |
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| T |
19577585 |
catccgtatcagtttaaattttttgagcagttggttaaccaattgttattttaacttgtaacttaaatatgttgaacgttgaagttagatgcaatatttt |
19577486 |
T |
|
| Q |
201 |
aaaaaacgatccggccagtttgctgggaaccctagtctggtttgattcagtcatgtcaagtgaacccaagggcgtatctgaactctcaatatcggtgagg |
300 |
Q |
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| T |
19577485 |
aaaaaacgatccggccagtttaccgggaaccctagtctggtttgattcggtcatgtcaagtgaacccaagggcgtatctggactctcaatatcggtgagg |
19577386 |
T |
|
| Q |
301 |
cataattttttgtcaaataattaaataaaacgtacacaggttct |
344 |
Q |
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| T |
19577385 |
cataattttttgtcaaataattaaataaaacgtacacatgttct |
19577342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 30710605 - 30710653
Alignment:
| Q |
288 |
aatatcggtgaggcataattttttgtcaaataattaaataaaacgtaca |
336 |
Q |
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| T |
30710605 |
aatatcggtgaggcataatttcttgtcaaataattaaataaaacgtaca |
30710653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 8064304 - 8064369
Alignment:
| Q |
267 |
caagggcgtatctgaactctcaatatcggtgaggcataa-ttttttgtcaaataattaaataaaac |
331 |
Q |
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| T |
8064304 |
caagggcggatctggactcaaaatatcgatgaggcacaaattttttgtcaaataattaaataaaac |
8064369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 17304305 - 17304349
Alignment:
| Q |
288 |
aatatcggtgaggcataat-tttttgtcaaataattaaataaaac |
331 |
Q |
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| T |
17304305 |
aatatcggtgaggcacaatgtttttgtcaaataattaaataaaac |
17304349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 7138208 - 7138280
Alignment:
| Q |
270 |
gggcgtatctgaactctcaatatcggtgaggcataatttttt----gtcaaataattaaataaaacgtacaca |
338 |
Q |
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| T |
7138208 |
gggcggatctgaactcaaaatattggtgaggcacaattttttcgcggtcaaataattaaataaaacgtacaca |
7138280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 5090615 - 5090673
Alignment:
| Q |
276 |
atctgaactctcaatatcggtgaggcataattttttgtcaaataattaaataaaacgta |
334 |
Q |
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| T |
5090615 |
atctggactcacaatattggtgaggcacaattttatgtcaaataatcaaataaaacgta |
5090673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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