View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16735_high_55 (Length: 354)
Name: NF16735_high_55
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_high_55 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 338
Target Start/End: Original strand, 29044819 - 29045140
Alignment:
| Q |
17 |
gataataacagcatgtttcagggccaagtcaatgtgcacgtcttagacatcggatatgtctttaatttgaagtgtccatgttacatatgagacaacgcaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29044819 |
gataataacagcatgtttcagggccaagtcaatgtgcacgtcttagacatcggatatgtctttaatttgaagtgtccatgttacatatgagacaacgcaa |
29044918 |
T |
|
| Q |
117 |
tcttcccaacacgctaaattacgtgggtctcatataaatttgaaaatagtgtgttgaaaatatagaaggacgtgttgaaaatcacgcgggactcataaat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29044919 |
tcttcccaacacgctaaattacgtgggtcccatataaatttgaaaatagtgtgttgaaaatatagaaggatgtgttgaaaatcacgcgggactcataaat |
29045018 |
T |
|
| Q |
217 |
ttcaaccaatatagaagaatgtgttgaaaatagtgtgtttggctatgtaccttgtagtgtaagatatctttagattaatgaagtgttatgtctgaaatgg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29045019 |
ttcaaccaatatagaagaatgtgttgaaaatagtgtgtttggctatgtaccttgtagtgtaagaaatctttagattaatgaagtgttatgtctgaaatgg |
29045118 |
T |
|
| Q |
317 |
atttattatttatcgttaatca |
338 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
29045119 |
atttattatttatcgttaatca |
29045140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University