View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16735_high_56 (Length: 340)
Name: NF16735_high_56
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_high_56 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 22573722 - 22574031
Alignment:
| Q |
18 |
caccttgttcttttgatctctcacaattgtttcatcaacacaatgttttaccagcacaccaccttgttctttgatcttcccattcttatccacattgcgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22573722 |
caccttgttcttttgatctctcacaattgtttcatcaacacaatgttttaccagcacaccaccttgttctttgatcttcccattcttatccacattgcgg |
22573821 |
T |
|
| Q |
118 |
cgaagtttgatccttctcctgacacggtgattcccatcaaggttgttaggtgatcgctctgacatgtccaacattgcttcagcaacatcagcttcaacgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22573822 |
cgaagtttgatccttctcctgacacggtgattcccatcaaggctgttaggtgatcgctctgacatgtccaacattgcttcagcaacatcagcttcaacgt |
22573921 |
T |
|
| Q |
218 |
cattaacataattccagctccgtttcttggtcacatacctcatcggtggcaaatactttctcaaatcaattggtggaaattgatcttgatcataattctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22573922 |
cattaacataattccagctccgtttcttggtcacatacctcatcggtggcaaatactttctcaaatcaattggtggaaattgatcttgatcataattctt |
22574021 |
T |
|
| Q |
318 |
actacccttc |
327 |
Q |
| |
|
|||||||||| |
|
|
| T |
22574022 |
actacccttc |
22574031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 327
Target Start/End: Original strand, 22564222 - 22564480
Alignment:
| Q |
72 |
cacaccaccttgttctttgatcttcccattcttatccacattgcggcgaagtttgatccttctcctgacacggtgattcccatcaaggttgttaggtgat |
171 |
Q |
| |
|
||||||||||||||| ||||||||| ||| | ||| ||| ||| || |||||| || ||| | || ||||||||||| ||| ||| ||| || |||| |
|
|
| T |
22564222 |
cacaccaccttgttcattgatcttctcatcatcatcgacactgctgcaaagtttcattcttttattgtcacggtgattcacattaagattggcagatgat |
22564321 |
T |
|
| Q |
172 |
cgctctgacatgtccaacattgcttcagcaacat---cagcttcaacgtcattaacataattccagctccgtttcttggtcacatacctcatcggtggca |
268 |
Q |
| |
|
||| ||||| |||| |||| ||||||||| | ||| |||||| ||| || ||||| ||||||||||||||||||| | ||||| || ||||||| |
|
|
| T |
22564322 |
tgctgagacatatccaccattatttcagcaacgttaacagtttcaacatcaagaaaataatcccagctccgtttcttggtctcgtaccttattggtggca |
22564421 |
T |
|
| Q |
269 |
aatactttctcaaatcaattggtggaaattgatcttgatcataattcttactacccttc |
327 |
Q |
| |
|
|||||||| | |||||||| |||||||| |||||| | || |||| |||||||||||| |
|
|
| T |
22564422 |
aatactttgttaaatcaatgggtggaaactgatctaggtcgcaattgttactacccttc |
22564480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University