View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_high_57 (Length: 338)
Name: NF16735_high_57
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_high_57 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 50122809 - 50122545
Alignment:
| Q |
13 |
gagaagaacaatatttatggcgtggacattcctcttttacgcttctatgtcaagtaagtgtatccttgactcttaacgaacaaaaattgattttgattga |
112 |
Q |
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| T |
50122809 |
gagaagaacaatatttatggcgtggacattcctcttttaagcttctatgtcaagtaagtgtatccttgactcttaacgaacaaaaattgattttgattga |
50122710 |
T |
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| Q |
113 |
aaattagctgaatgtaaaataatttatatttgaataaatttgcacaaaaataactatatcaatttatgtttggatagtacgaatcagagttggttttgta |
212 |
Q |
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| T |
50122709 |
aaattagctgaatgtaaaataattaat-tttgaataaatttgcacaaaaataactatatcaatttatgtttggatagtacgaatcagagttggttttgta |
50122611 |
T |
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| Q |
213 |
tttatgtcaacaaatttgagaatttattctatgttgcgagagaaaatagaaatatgaacttttagg |
278 |
Q |
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| T |
50122610 |
tttatgtcaacaaatttgagaatttattctatgttgcgagagaaaatagaaatatgaacttttagg |
50122545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 50122525 - 50122483
Alignment:
| Q |
278 |
ggaatcaattctaaaatccaaacataacaatttatggtctaat |
320 |
Q |
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| T |
50122525 |
ggaatcaattctaaagtccaaacataataatttatggtctaat |
50122483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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