View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16735_high_58 (Length: 334)
Name: NF16735_high_58
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_high_58 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 23916302 - 23916605
Alignment:
| Q |
18 |
gtgcatttccttccctttaatccagtggacaagtgtagctccttaacatacatagacattgacggtaattggcaccgagtaagcaagggagcaccggagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23916302 |
gtgcatttccttccctttaatccagtggacaagtgtagctccttaacatacatagacactgacggtaattggcaccgagtaagcaagggagcaccggagg |
23916401 |
T |
|
| Q |
118 |
aggtaaacaaatagacctttcaccggtcatatttggcatctattgtttcacatgacaataagtttttgaatttccttttagattattgatttgtgcaacg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23916402 |
aggtaaacaaatagacctttcaccggtcatatttggcatctattgtttcacatgacaataagtttttgaatttccttttagattattgatttgtgcaacg |
23916501 |
T |
|
| Q |
218 |
ttagagaagatgtgagaaggagagctatttccattattgataaatttgctgaacgcagtctctcttcccttgctgttggtaaacaaataagcttttctta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23916502 |
ttagagaagatgtgagaaggagagctatttccattattgataaatttgctgaacgcagtctctcttcccttgctgttggtaaacaaataagcttttctta |
23916601 |
T |
|
| Q |
318 |
cttc |
321 |
Q |
| |
|
|||| |
|
|
| T |
23916602 |
cttc |
23916605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 18989221 - 18988918
Alignment:
| Q |
18 |
gtgcatttccttccctttaatccagtggacaagtgtagctccttaacatacatagacattgacggtaattggcaccgagtaagcaagggagcaccggagg |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18989221 |
gtgcatttctttccctttaatccagtggacaagtgtagctccttaacatacatagacactgacggtaattggcaccgagtaagcaagggagcaccggagg |
18989122 |
T |
|
| Q |
118 |
aggtaaacaaatagacctttcaccggtcatatttggcatctattgtttcacatgacaataagtttttgaatttccttttagattattgatttgtgcaacg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18989121 |
aggtaaacaaatagacctttcaccggtcatatttggcatctattgtttcacatgacaataagtttttgaatttccttttagattattgatttgtgcaacg |
18989022 |
T |
|
| Q |
218 |
ttagagaagatgtgagaaggagagctatttccattattgataaatttgctgaacgcagtctctcttcccttgctgttggtaaacaaataagcttttctta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18989021 |
ttagagaagatgtgagaaggagagctatttccattattgataaatttgctgaacacagtctctcttcccttgctgttggtaaacaaataagcttttctta |
18988922 |
T |
|
| Q |
318 |
cttc |
321 |
Q |
| |
|
|||| |
|
|
| T |
18988921 |
cttc |
18988918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 30340551 - 30340854
Alignment:
| Q |
18 |
gtgcatttccttccctttaatccagtggacaagtgtagctccttaacatacatagacattgacggtaattggcaccgagtaagcaagggagcaccggagg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30340551 |
gtgcatttccttccctttaatccagtggacaagcgtagctccttaacatacatagacactgacggtaattggcaccgagtaagcaagggagcaccggagg |
30340650 |
T |
|
| Q |
118 |
aggtaaacaaatagacctttcaccggtcatatttggcatctattgtttcacatgacaataagtttttgaatttccttttagattattgatttgtgcaacg |
217 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
30340651 |
aggtaaacaaatagacctttcaccagtcatatttggcatctattgtttcacatgacaataattttttgaatttccttttagattattgaattgtgcagca |
30340750 |
T |
|
| Q |
218 |
ttagagaagatgtgagaaggagagctatttccattattgataaatttgctgaacgcagtctctcttcccttgctgttggtaaacaaataagcttttctta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30340751 |
ttagagaagatgtgagaaggagagctatttccattattgacaaatttgctgaacgcagtctctcttcccttgctgttggtaaacaagtaagcttttctta |
30340850 |
T |
|
| Q |
318 |
cttc |
321 |
Q |
| |
|
|||| |
|
|
| T |
30340851 |
cttc |
30340854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 45198424 - 45198121
Alignment:
| Q |
18 |
gtgcatttccttccctttaatccagtggacaagtgtagctccttaacatacatagacattgacggtaattggcaccgagtaagcaagggagcaccggagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||| | || ||||||||||||||| ||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
45198424 |
gtgcatttccttccctttaatccagtcgacaagcgtaccgccataacatacatagacactgacggtaattggcaccgagtaagcaaaggggcaccggagc |
45198325 |
T |
|
| Q |
118 |
aggtaaacaaatagacctttcaccggtcatatttggcatctattgtttcacatgacaataagtttttgaatttccttttagattattgatttgtgcaacg |
217 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45198324 |
aggtaaacaaatagacctttcaccagtcatatttgacatctatcgtttcacatgacaatacatttttgaatttccttttagattattgatctgtgcaacc |
45198225 |
T |
|
| Q |
218 |
ttagagaagatgtgagaaggagagctatttccattattgataaatttgctgaacgcagtctctcttcccttgctgttggtaaacaaataagcttttctta |
317 |
Q |
| |
|
||||||||||||| | |||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||| ||||||||| ||| |
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|
| T |
45198224 |
ttagagaagatgtaaagaggaaagctatttccattattgataaatttgctgaacgcggtctccgttcccttgctgttggcaaacaagtaagcttttatta |
45198125 |
T |
|
| Q |
318 |
cttc |
321 |
Q |
| |
|
|||| |
|
|
| T |
45198124 |
cttc |
45198121 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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