View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16735_high_59 (Length: 332)

Name: NF16735_high_59
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16735_high_59
NF16735_high_59
[»] chr4 (1 HSPs)
chr4 (13-317)||(2719177-2719471)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 317
Target Start/End: Original strand, 2719177 - 2719471
Alignment:
Q  13 aaaataaatatttgtttggtatgcctcattgttggaataatatacaggatacatcgatcgtaaactggatcgtagtatttatatttagttacaagttgca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||          |||||||||    
T  2719177 aaaataaatatttgtttggtatgcctcattgttggaataatatacagtatacatcgatcgtaaactggatcgtagtattta----------caagttgca 2719266  T
Q  113 ttatttaaaccttaagtttaaataatgcaaagttatggtaaatactctactatcgaagacataagcacaattgaccgaacttcataatcaaattactttt 212  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2719267 ttatttaaaccctaagtttaaataatgcaaagttatggtaaatactctactatcgaagacataagcacaattgaccgaagttcataatcaaattactttt 2719366  T
Q  213 ggaccgaagttactattttaacgatatgtgtgcaattttatatacgtgtagtgttcacatcacaccagctataaggtgtgcttagaaccgcctaagagaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2719367 ggaccgaagttactattttaacgatatgtgtgcaattttatatacgtgtagtgttcacatcacaccagctataaggtgtgcttagaaccgcctaagagaa 2719466  T

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