View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_high_66 (Length: 304)
Name: NF16735_high_66
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_high_66 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 51 - 290
Target Start/End: Complemental strand, 31669640 - 31669401
Alignment:
| Q |
51 |
attatggttctgggaaaattaatattgaaactaattcacaaagttaattcaaaagtgaaaccaaaacaaaattgaagaacaaggtagaaaacccctttca |
150 |
Q |
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| T |
31669640 |
attatggttctgggaaaattaatattgaaactaattcacaaagttaattcaaaagtgaaaccaaaacaaaattgaagaagaaggtagaaaaccactttca |
31669541 |
T |
|
| Q |
151 |
aaacaagtataaaattgaaaccaacgggaaattgaacaaggttggatctgggaagcggttgaatggagaggttagaaaaccaaaatcattaacaaacaac |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31669540 |
aaacaagtataaaattgaaaccaacgggaaattgaacaaggttggatctgggaagcggttgaatggagaggttagaaaaccaaaatcattaacaaacagc |
31669441 |
T |
|
| Q |
251 |
gcagtgttcagaaattgaattggaaaataagggaaattga |
290 |
Q |
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| T |
31669440 |
acagtgttcagaaattgaattggaaaataagggaaattga |
31669401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 51 - 290
Target Start/End: Original strand, 33047885 - 33048124
Alignment:
| Q |
51 |
attatggttctgggaaaattaatattgaaactaattcacaaagttaattcaaaagtgaaaccaaaacaaaattgaagaacaaggtagaaaacccctttca |
150 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
33047885 |
attatggttctgggaaaattaatattgaaactaattcacaaagttaattcaaaagtgaaaccaaaacaaaattgaagaagaaggtagaaaaccactttca |
33047984 |
T |
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| Q |
151 |
aaacaagtataaaattgaaaccaacgggaaattgaacaaggttggatctgggaagcggttgaatggagaggttagaaaaccaaaatcattaacaaacaac |
250 |
Q |
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| T |
33047985 |
aaacaagtataaaattgaaaccaacgggaaattgaacaaggttggatctgggaagcggttgaatggagaggttagaaaaccaaaatcattaacaaacagc |
33048084 |
T |
|
| Q |
251 |
gcagtgttcagaaattgaattggaaaataagggaaattga |
290 |
Q |
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| T |
33048085 |
acagtgttcagaaattgaattggaaaataagggaaattga |
33048124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 51 - 290
Target Start/End: Complemental strand, 35986373 - 35986137
Alignment:
| Q |
51 |
attatggttctgggaaaattaatattgaaactaattcacaaagttaattcaaaagtgaaaccaaaacaaaattgaagaacaaggtagaaaacccctttca |
150 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||| |
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| T |
35986373 |
attatggttctgggaaaattaatattgaaactaattcacaaagttaattcaaaagtgaaaccaaaacaaaattgaagaa---ggtagaaaatcactttca |
35986277 |
T |
|
| Q |
151 |
aaacaagtataaaattgaaaccaacgggaaattgaacaaggttggatctgggaagcggttgaatggagaggttagaaaaccaaaatcattaacaaacaac |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35986276 |
aaacaagtataaaattgaaaccaacgggaaattgaacaaggttggatctgggaagcggttgaatggagaggttagaaaaccaaaatcattaacaaacagc |
35986177 |
T |
|
| Q |
251 |
gcagtgttcagaaattgaattggaaaataagggaaattga |
290 |
Q |
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|
| T |
35986176 |
acagtgttcagaaattgaattggaaaataagggaaattga |
35986137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 51 - 290
Target Start/End: Complemental strand, 36007781 - 36007545
Alignment:
| Q |
51 |
attatggttctgggaaaattaatattgaaactaattcacaaagttaattcaaaagtgaaaccaaaacaaaattgaagaacaaggtagaaaacccctttca |
150 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||| |
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| T |
36007781 |
attatggttctgggaaaattaatattgaaactaattcacaaagttaattcaaaagtgaaaccaaaacaaaattgaagaa---ggtagaaaatcactttca |
36007685 |
T |
|
| Q |
151 |
aaacaagtataaaattgaaaccaacgggaaattgaacaaggttggatctgggaagcggttgaatggagaggttagaaaaccaaaatcattaacaaacaac |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36007684 |
aaacaagtataaaattgaaaccaacgggaaattgaacaaggttggatctgggaagcggttgaatggagaggttagaaaaccaaaatcattaacaaacagc |
36007585 |
T |
|
| Q |
251 |
gcagtgttcagaaattgaattggaaaataagggaaattga |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
36007584 |
acagtgttcagaaattgaattggaaaataagggaaattga |
36007545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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