View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_high_88 (Length: 248)
Name: NF16735_high_88
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_high_88 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 3892 - 3671
Alignment:
| Q |
21 |
catgcatgaacatgacacaactcttcatcaatctctatctaacaaaggcctcaatgttacacttgactccaaaaacaacatcctcaaaatcaaatgtgat |
120 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3892 |
catgcatgaacatgacacaactcttcaacaatctctatctaacaaaggcctcaatgttacacttgactccaaaaacaacatcctcaaaatcaaatgtgat |
3793 |
T |
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| Q |
121 |
gcagtagttgttggttctggctgtggaggaggtgtagcagcttctgtcctatcaaaatctggctacaaagtggttgttctcgagaaaggaaactattttg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3792 |
gcagtagttgttggttctggctgtggaggaggtgtagcagcttctgtcctatcaaaagctggctacaaagtggttgttctcgagaaaggaaactattttg |
3693 |
T |
|
| Q |
221 |
ttcccaaagattattcatctct |
242 |
Q |
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|||||||||||||||||||||| |
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| T |
3692 |
ttcccaaagattattcatctct |
3671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 31319778 - 31319999
Alignment:
| Q |
21 |
catgcatgaacatgacacaactcttcatcaatctctatctaacaaaggcctcaatgttacacttgactccaaaaacaacatcctcaaaatcaaatgtgat |
120 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31319778 |
catgcatgaacatgacacaactcttcaacaatctctatctaacaaaggcctcaatgttacacttgactccaaaaacaacatcctcaaaatcaaatgtgat |
31319877 |
T |
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| Q |
121 |
gcagtagttgttggttctggctgtggaggaggtgtagcagcttctgtcctatcaaaatctggctacaaagtggttgttctcgagaaaggaaactattttg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31319878 |
gcagtagttgttggttctggctgtggaggaggtgtagcagcttctgtcctatcaaaagctggctacaaagtggttgttctcgagaaaggaaactattttg |
31319977 |
T |
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| Q |
221 |
ttcccaaagattattcatctct |
242 |
Q |
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|||||||||||||||||||||| |
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| T |
31319978 |
ttcccaaagattattcatctct |
31319999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 31332031 - 31332252
Alignment:
| Q |
21 |
catgcatgaacatgacacaactcttcatcaatctctatctaacaaaggcctcaatgttacacttgactccaaaaacaacatcctcaaaatcaaatgtgat |
120 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31332031 |
catgcatgaacatgacacaactcttcaacaatctctatctaacaaaggcctcaatgttacacttgactccaaaaacaacatcctcaaaatcaaatgtgat |
31332130 |
T |
|
| Q |
121 |
gcagtagttgttggttctggctgtggaggaggtgtagcagcttctgtcctatcaaaatctggctacaaagtggttgttctcgagaaaggaaactattttg |
220 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31332131 |
gcagtagttgttggttctggctgtggaggaggtgtagcagcttctgtcctatcaaaagctggctacaaagtggttgttctcgagaaaggaaactattttg |
31332230 |
T |
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| Q |
221 |
ttcccaaagattattcatctct |
242 |
Q |
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|||||||||||||||||||||| |
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| T |
31332231 |
ttcccaaagattattcatctct |
31332252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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