View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16735_high_95 (Length: 243)

Name: NF16735_high_95
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16735_high_95
NF16735_high_95
[»] chr6 (29 HSPs)
chr6 (20-233)||(4581388-4581601)
chr6 (53-233)||(4612292-4612472)
chr6 (50-233)||(4517714-4517897)
chr6 (53-233)||(4618675-4618855)
chr6 (45-233)||(4623681-4623869)
chr6 (53-233)||(4507285-4507465)
chr6 (70-233)||(4569448-4569607)
chr6 (53-226)||(4513553-4513726)
chr6 (50-233)||(4627524-4627707)
chr6 (47-233)||(4482239-4482425)
chr6 (43-233)||(4558499-4558689)
chr6 (53-217)||(4594400-4594564)
chr6 (45-233)||(4258742-4258930)
chr6 (49-233)||(4488767-4488951)
chr6 (55-233)||(4603484-4603662)
chr6 (49-218)||(4265627-4265796)
chr6 (43-233)||(4572340-4572530)
chr6 (47-233)||(4575829-4576015)
chr6 (53-233)||(3173377-3173557)
chr6 (129-233)||(4502943-4503047)
chr6 (53-215)||(4565421-4565583)
chr6 (46-198)||(4599572-4599724)
chr6 (49-198)||(4471323-4471472)
chr6 (56-233)||(4587006-4587183)
chr6 (45-215)||(4255387-4255545)
chr6 (49-198)||(4462616-4462765)
chr6 (111-233)||(4562036-4562158)
chr6 (153-233)||(4298172-4298252)
chr6 (162-197)||(4483534-4483569)
[»] scaffold0475 (1 HSPs)
scaffold0475 (47-226)||(2205-2384)
[»] chr7 (1 HSPs)
chr7 (43-226)||(3088126-3088309)
[»] scaffold0288 (1 HSPs)
scaffold0288 (53-226)||(2025-2198)
[»] chr3 (1 HSPs)
chr3 (53-233)||(1282807-1282987)
[»] chr8 (2 HSPs)
chr8 (24-219)||(20862355-20862550)
chr8 (54-233)||(1675895-1676074)
[»] scaffold0199 (1 HSPs)
scaffold0199 (54-233)||(1132-1311)
[»] chr5 (1 HSPs)
chr5 (49-194)||(24104508-24104653)
[»] chr2 (1 HSPs)
chr2 (141-198)||(1349579-1349636)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 4581601 - 4581388
Alignment:
20 aactcagaaatgagtcatttttctgataaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
4581601 aactcagaaatgagtcatttttctgataaaaagccacatgcagtgttgattccatatccacttcaaggacatatcactccattaataacactagcaaagc 4581502  T
120 ttcttcaccttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
4581501 ttcttcaccttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcgtttgatggtttcac 4581402  T
220 cgattttacctttg 233  Q
    ||||||||||||||    
4581401 cgattttacctttg 4581388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 53 - 233
Target Start/End: Original strand, 4612292 - 4612472
Alignment:
53 ccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg 152  Q
    |||||||||||||| |||||||||||| ||||||| ||||| | ||||||||| | ||||||||| ||||||||||||||||||||||||||||| || |    
4612292 ccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataacattcg 4612391  T
153 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||    
4612392 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggtttcactgattttacctttg 4612472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 50 - 233
Target Start/End: Complemental strand, 4517897 - 4517714
Alignment:
50 aagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacct 149  Q
    ||||||||||||||| | | |||||||||||||||||| ||||| | ||| ||  ||| ||||||||| |||||||| ||||||||||||||||||||||    
4517897 aagccacatgcagtgataactccatatccacttcaaggccatatcaatccgttgttaaaactagcaaaacttcttcatcttagaggctttcacataacct 4517798  T
150 ttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
4517797 ttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttg 4517714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 53 - 233
Target Start/End: Complemental strand, 4618855 - 4618675
Alignment:
53 ccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg 152  Q
    |||||||  ||| |||||||||||||| ||||||| ||||| | ||||||  | | ||||||||||||||||||||||||||||||||||||||||||||    
4618855 ccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttg 4618756  T
153 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||| |||||    
4618755 ttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcttttgatggtttcacggactttaactttg 4618675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 45 - 233
Target Start/End: Complemental strand, 4623869 - 4623681
Alignment:
45 ataaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacat 144  Q
    |||||||||||||||| ||||||||| |||||||| ||||||| ||||| | ||||||  | | |||||||||||||||| |||||| ||||||||||||    
4623869 ataaaaagccacatgctgtgttgattgcatatccagttcaaggtcatatcaatccattgttcaaactagcaaagcttctttaccttaaaggctttcacat 4623770  T
145 aacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    ||||||||   |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| |||||    
4623769 aacctttggtcacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcctttgatggtttcacggactttaactttg 4623681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 53 - 233
Target Start/End: Complemental strand, 4507465 - 4507285
Alignment:
53 ccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg 152  Q
    |||||||| ||||||||||||||||||  |||||| ||||| | ||||||  | | |||||| ||||||||||||||| |||||||||||||||||||||    
4507465 ccacatgctgtgttgattccatatccaactcaaggccatatcaatccattgttcaaactagctaagcttcttcaccttcgaggctttcacataacctttg 4507366  T
153 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    | ||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||| ||||||| |||||    
4507365 ttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgattttaactttg 4507285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 70 - 233
Target Start/End: Complemental strand, 4569607 - 4569448
Alignment:
70 tccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttgtcaacaccgaatacaat 169  Q
    |||||||||||||||||| ||||| | ||||||| | | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    |||    
4569607 tccatatccacttcaaggccatatcaatccattattgaaactagcaaaacttcttcaccttagaggctttcacataacctttgtcaacaccga----aat 4569512  T
170 cacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
4569511 cacaaacatttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttg 4569448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 53 - 226
Target Start/End: Original strand, 4513553 - 4513726
Alignment:
53 ccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg 152  Q
    |||||||| |||||||||||||||||||||||||| ||||| | |||| |  | | | ||||||| || |||||||||||||||||||||||||||||||    
4513553 ccacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttcagattagcaaaactacttcaccttagaggctttcacataacctttg 4513652  T
153 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgatttt 226  Q
    | ||||||||||||||||||||||| |||||||||||||||||||| || || |||||||||||||||||||||    
4513653 ttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgatttt 4513726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 50 - 233
Target Start/End: Complemental strand, 4627707 - 4627524
Alignment:
50 aagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacct 149  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||| | ||||||  | | |||||||||  | ||||||||||||||||||||||||||||    
4627707 aagccacatgctgtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaattacttcaccttagaggctttcacataacct 4627608  T
150 ttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||  ||| |||||||||||||||   |||||||||||||    
4627607 ttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttg 4627524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 47 - 233
Target Start/End: Complemental strand, 4482425 - 4482239
Alignment:
47 aaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataa 146  Q
    ||||| |||||||||||||||| ||||| ||||  |||||| ||||| | | ||||  | | | ||| ||| || |||||||||||||||||||||||||    
4482425 aaaaaaccacatgcagtgttgactccatttccagctcaaggccatatcaatgcattgttgaaaataggaaaactacttcaccttagaggctttcacataa 4482326  T
147 cctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||    
4482325 cctttgtcaacaccgaatacaatcacaaacgtttgctaaaatcaaggggtccaaaagcctttgatggtttcactgattttacctttg 4482239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 43 - 233
Target Start/End: Complemental strand, 4558689 - 4558499
Alignment:
43 tgataaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcac 142  Q
    ||||||||| |||||||| ||||| |||||||||||| ||||||| ||||| | ||||||  | | ||||||||| ||||||||||||||||| ||||||    
4558689 tgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggatttcac 4558590  T
143 ataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    ||||||| ||| ||||| |||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||    
4558589 ataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttagctttg 4558499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 53 - 217
Target Start/End: Complemental strand, 4594564 - 4594400
Alignment:
53 ccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg 152  Q
    |||||||| ||||||||||||  |||||||||||||||||||| ||||||  | | ||| ||||| ||||||||||||||||| ||||||||||||||||    
4594564 ccacatgctgtgttgattccagctccacttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcacataacctttg 4594465  T
153 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttc 217  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||    
4594464 tcaacactgaatacaatcataaacgtttgctcaaatcaagaggtccaaatgccttagatggtttc 4594400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 45 - 233
Target Start/End: Original strand, 4258742 - 4258930
Alignment:
45 ataaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacat 144  Q
    |||||||||||||||| ||||||||||||||||||  |||||| ||||| | ||||||  | | |||||| |||||||||||| ||| ||| ||||||||    
4258742 ataaaaagccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagctaagcttcttcactttaaaggttttcacat 4258841  T
145 aacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||  ||| ||| ||||||||||||  |||||||||||||    
4258842 aacctttgtcaacactgaatataatcacaaacgtttgctcaaatcaagaggtgaaaatgccgttgatggtttcattgattttacctttg 4258930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 49 - 233
Target Start/End: Original strand, 4488767 - 4488951
Alignment:
49 aaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacc 148  Q
    |||||||||||||||||| |  |||| |||| ||||||| ||||| | | ||||  | | ||||| ||| || |||||||||||||| ||||||||||||    
4488767 aaagccacatgcagtgttaacaccatttccagttcaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggatttcacataacc 4488866  T
149 tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||| |||||    
4488867 tttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttaactgattttagctttg 4488951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 55 - 233
Target Start/End: Complemental strand, 4603662 - 4603484
Alignment:
55 acatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttgtc 154  Q
    |||||| |||||||||||||||||||||||||| ||||| | |||| |  | | ||||||||| ||  ||||||||||||| ||||||||||||||||||    
4603662 acatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtc 4603563  T
155 aacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    ||||||||||||||||||||||| |||||||||||||||||||| || ||||| || || ||||| ||||||| |||||    
4603562 aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagacggcttcactgattttagctttg 4603484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 49 - 218
Target Start/End: Original strand, 4265627 - 4265796
Alignment:
49 aaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacc 148  Q
    |||||||||||| ||||||||||||  |||| ||||||| ||||| | | ||||  | |  |||| ||||||||||||||||||||||||||||||||||    
4265627 aaagccacatgctgtgttgattccagctccatttcaaggccatatcaatgcattgttcaatctaggaaagcttcttcaccttagaggctttcacataacc 4265726  T
149 tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttca 218  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||  |  ||||||||||||    
4265727 tttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaattctcttgatggtttca 4265796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 43 - 233
Target Start/End: Complemental strand, 4572530 - 4572340
Alignment:
43 tgataaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcac 142  Q
    ||||||||| |||||||| ||||| || ||||||||| ||||||| ||||| | ||||||  |   |||||||||  |||||||||||||||| ||||||    
4572530 tgataaaaaaccacatgctgtgttaatcccatatccagttcaaggccatatcaatccattgttgcaactagcaaaatttcttcaccttagaggttttcac 4572431  T
143 ataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    ||||||| ||| ||||| ||||||||||||||||| |||||||| |||||||||| ||| |||||||||||||||||| |||||| |||||    
4572430 ataacctatgtaaacactgaatacaatcacaaacggttgctcaagtcaagaggtcaaaatgcctttgatggtttcaccaattttaactttg 4572340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 47 - 233
Target Start/End: Complemental strand, 4576015 - 4575829
Alignment:
47 aaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataa 146  Q
    |||||||||||||||||||| | ||||| |||| ||||||| ||||| | | ||||  | | | ||||||| || |||||||||||||||||||||||||    
4576015 aaaaagccacatgcagtgttaactccatttccagttcaaggccatatcaatgcattgttgaaaatagcaaaactgcttcaccttagaggctttcacataa 4575916  T
147 cctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||||||||||  ||| ||||||||||||||||| || |||| |||||    
4575915 cctttgttaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgactttaactttg 4575829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 53 - 233
Target Start/End: Complemental strand, 3173557 - 3173377
Alignment:
53 ccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg 152  Q
    |||||||||||||| | |||||||||| ||||||| ||||| | | ||||  | | ||||||||| || |||||| ||||||||||||||||||||||||    
3173557 ccacatgcagtgttaactccatatccagttcaaggccatatcaatgcattgttgaaactagcaaaactacttcactttagaggctttcacataacctttg 3173458  T
153 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    | ||||| ||||||||||||||||| |||||||||||||  |||||||| ||||||||||||||||  ||||||| |||||    
3173457 taaacactgaatacaatcacaaacggttgctcaaatcaaagggtccaaatgcctttgatggtttcaatgattttaactttg 3173377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 4502943 - 4503047
Alignment:
129 ttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttac 228  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||    
4502943 ttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttac 4503042  T
229 ctttg 233  Q
    |||||    
4503043 ctttg 4503047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 53 - 215
Target Start/End: Complemental strand, 4565583 - 4565421
Alignment:
53 ccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg 152  Q
    |||||||| ||||||||||||  |||| ||||||||||||||| ||||||  | | ||| ||||| ||||||||||||||||| ||||| ||||||||||    
4565583 ccacatgctgtgttgattccagctccatttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcatataacctttg 4565484  T
153 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtt 215  Q
    ||||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||||| |||||||    
4565483 tcaacactgaatacaatcataaacgattgctaaaatcaagaggtccaaatgccttagatggtt 4565421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 46 - 198
Target Start/End: Complemental strand, 4599724 - 4599572
Alignment:
46 taaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacata 145  Q
    |||||| | ||||||||| ||||||||||  ||| |||||||| |||| | || |||||| | |||||||||| |||||||||||||||| ||| |||||    
4599724 taaaaaactacatgcagtattgattccattaccaattcaaggaaatatcaatctattaatcaaactagcaaagattcttcaccttagaggattttacata 4599625  T
146 acctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtcc 198  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||||||||    
4599624 accttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcc 4599572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 198
Target Start/End: Complemental strand, 4471472 - 4471323
Alignment:
49 aaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacc 148  Q
    |||||||||||| || |||||||||| ||||  |||||| ||||| | | ||||  | | |||||||||||||||||||||||||||||||||||||||     
4471472 aaagccacatgctgtattgattccatgtccagctcaaggccatatcaatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacg 4471373  T
149 tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtcc 198  Q
    ||||||||||| |||||||||||||||  ||||||||| |||||||||||    
4471372 tttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcc 4471323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 233
Target Start/End: Complemental strand, 4587183 - 4587006
Alignment:
56 catgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttgtca 155  Q
    ||||| ||||| || |||| |||| ||||||| ||||| | ||||||  | | |||||| || |||||||||||| |||| ||||||||||||||||| |    
4587183 catgctgtgttaatcccatctccagttcaaggccatatcaatccattgttgaaactagctaaacttcttcaccttcgaggatttcacataacctttgtaa 4587084  T
156 acaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    |||| ||||||||||||||||| ||||| || ||||||| |||||| |||||||||| ||| || ||||||| |||||    
4587083 acactgaatacaatcacaaacggttgcttaagtcaagagctccaaatgcctttgatgatttaactgattttagctttg 4587006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 215
Target Start/End: Original strand, 4255387 - 4255545
Alignment:
45 ataaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacat 144  Q
    |||||| ||||||||| |||||||||||||||||| ||||||| ||||| | || |||| | | |||||||||  | ||||| |||| |||||||         
4255387 ataaaatgccacatgctgtgttgattccatatccagttcaaggccatatcaatctattattcaaactagcaaaattacttcatcttaaaggcttt----- 4255481  T
145 aacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtt 215  Q
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
4255482 -------gtcaacaccgaatacaatcacaaacgcttgctcgaatcaagaggtccaaaagcctttgatggtt 4255545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 198
Target Start/End: Complemental strand, 4462765 - 4462616
Alignment:
49 aaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacc 148  Q
    |||||||||||| ||||||||||||| ||||   ||||| ||||| | | ||||  | | ||||| ||| || |||||||||||||| ||||||||||||    
4462765 aaagccacatgctgtgttgattccatgtccatcccaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggttttcacataacc 4462666  T
149 tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtcc 198  Q
    ||||||||||| ||||||||||||||  |||||||||| |||||||||||    
4462665 tttgtcaacactgaatacaatcacaattgcttgctcaattcaagaggtcc 4462616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 233
Target Start/End: Complemental strand, 4562158 - 4562036
Alignment:
111 tagcaaagcttcttcaccttagaggctttcacataa-cctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttg 209  Q
    ||||||| || |||||||| |||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||| ||||||||||||  ||| |||||||    
4562158 tagcaaaactgcttcacctaagaggctttcacataaacctttgttaacactgaatacaatcacaaacgtttgct-aaatcaagaggtgaaaatgcctttg 4562060  T
210 atggtttcaccgattttacctttg 233  Q
    |||||||||| || |||| |||||    
4562059 atggtttcactgactttaactttg 4562036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 4298172 - 4298252
Alignment:
153 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    |||||||||||||||||||||||| | ||||| ||||||| ||||||||||| ||||||||||||||| | |||| |||||    
4298172 tcaacaccgaatacaatcacaaacacctgctcgaatcaaggggtccaaaagcttttgatggtttcaccaactttagctttg 4298252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 197
Target Start/End: Original strand, 4483534 - 4483569
Alignment:
162 aatacaatcacaaacgcttgctcaaatcaagaggtc 197  Q
    |||||||||||||||| |||||||||||||||||||    
4483534 aatacaatcacaaacgtttgctcaaatcaagaggtc 4483569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 47 - 226
Target Start/End: Complemental strand, 2384 - 2205
Alignment:
47 aaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataa 146  Q
    ||||| |||||||| |||||||||||||||||| ||||||| ||||| | ||||||| | | ||||||||||||||||||||||||||||||||||||||    
2384 aaaaaaccacatgctgtgttgattccatatccagttcaaggccatatcaatccattattcaaactagcaaagcttcttcaccttagaggctttcacataa 2285  T
147 cctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgatttt 226  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||  ||||||||||| | ||||||    
2284 cctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttt 2205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 43 - 226
Target Start/End: Complemental strand, 3088309 - 3088126
Alignment:
43 tgataaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcac 142  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||  ||| ||||||||| ||||||||||||| ||||||||||    
3088309 tgataaaaagccacatgctgtgttgattccatatccacttcaaggtcatataaatccattgttaaaactagcaaaacttcttcaccttaaaggctttcac 3088210  T
143 ataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgatttt 226  Q
    |||||||||||||| ||||||||||||||||| || ||||| |||||||||||| | ||  |  ||||||||||||| ||||||    
3088209 ataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgatttt 3088126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 53 - 226
Target Start/End: Original strand, 2025 - 2198
Alignment:
53 ccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg 152  Q
    |||||||  ||| |||||||||||||| ||||||| ||||| | ||||||  | | ||||||||||||||||||||||||||||||||||||||||||||    
2025 ccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttg 2124  T
153 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgatttt 226  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||| || ||  ||||||||||| | ||||||    
2125 tcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttt 2198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 53 - 233
Target Start/End: Complemental strand, 1282987 - 1282807
Alignment:
53 ccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg 152  Q
    |||||||| ||||||||||||||||||  |||||| ||||| | ||||||  | | ||||||||| || |||||||||||||||||| ||||||||||||    
1282987 ccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 1282888  T
153 tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    | || || ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| ||||||| |||||    
1282887 ttaatactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccctagatggtttcactgattttagctttg 1282807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 20862355 - 20862550
Alignment:
24 cagaaatgagtcatttttctgataaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttct 123  Q
    |||| |||||| ||||| |||| ||||| |||||||||||||| | |||||||||||||||||| ||||| | |||| |  ||| ||||||||| || ||    
20862355 cagagatgagtaattttgctgagaaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactact 20862454  T
124 tcaccttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcac 219  Q
    |||||||||||||||| ||||||| |||||||| || ||||||||||||||||||||||| || ||||  ||||||| | ||||||||||||||||    
20862455 tcaccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcac 20862550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 54 - 233
Target Start/End: Complemental strand, 1676074 - 1675895
Alignment:
54 cacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttgt 153  Q
    ||||||| ||||| ||||||||||||  |||||| ||||| | ||||||  | | ||||||||| ||| ||||||||||||||| |||  |||||| |||    
1676074 cacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacctatgt 1675975  T
154 caacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||| ||||||| |||||    
1675974 caacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttg 1675895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 54 - 233
Target Start/End: Complemental strand, 1311 - 1132
Alignment:
54 cacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttgt 153  Q
    ||||||| ||||| ||||||||||||  |||||| ||||| | ||||||  | | ||||||||| ||| ||||||||||||||| |||  |||||| |||    
1311 cacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacctatgt 1212  T
154 caacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttg 233  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||| ||||||| |||||    
1211 caacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttg 1132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 194
Target Start/End: Complemental strand, 24104653 - 24104508
Alignment:
49 aaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacc 148  Q
    |||||| ||||| ||||||||||||  |||| ||||||| ||||| | | ||||  | | ||||| ||||||||||||||||||||||||||||||||||    
24104653 aaagccgcatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcaccttagaggctttcacataacc 24104554  T
149 tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagag 194  Q
    || || |||||||||||||||||||||||||||||| |||||||||    
24104553 ttcgtgaacaccgaatacaatcacaaacgcttgctcgaatcaagag 24104508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 1349579 - 1349636
Alignment:
141 acataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtcc 198  Q
    ||||||| ||||||||||| |||| ||| ||||||||||| |||||||| | ||||||    
1349579 acataacatttgtcaacactgaattcaaccacaaacgcttactcaaatccataggtcc 1349636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University