View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_high_96 (Length: 242)
Name: NF16735_high_96
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_high_96 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 55983170 - 55982944
Alignment:
| Q |
1 |
attgtaaaatttcccctagaattggaaagagacataggaaatagcgtcactcgtagtaaataccactcatgcac----tcacgattggtcttgcaaatat |
96 |
Q |
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| T |
55983170 |
attgtaaagtttcccctagaattggaaagagacataggaaatagcgtcactcgtagtaaataccactcatgcacgcactcacgattggtcttgcaaatac |
55983071 |
T |
|
| Q |
97 |
caaaacagaagagaagaaagaagggaaaagtaattcaattttctgttctgatgaagtagtctgaactcagctggtgtgctaatttctaatgtgtannnnn |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55983070 |
caaaacagaagagaagaaagaagggaaaagtaattcaattttctgttctgatgaagtagtctgaactcagctggtgtgctaatttctaatgtgtattttt |
55982971 |
T |
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| Q |
197 |
nncattagctgattaaattgttagcct |
223 |
Q |
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|||||||| |||||||||||||||| |
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| T |
55982970 |
tacattagctaattaaattgttagcct |
55982944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 6297687 - 6297626
Alignment:
| Q |
58 |
aaataccactcatgcactcacgattggtcttgcaaatatcaaaacagaagagaagaaagaag |
119 |
Q |
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| T |
6297687 |
aaataccactcatgcactgatgaatagtcttgtaaataccaaaacagaggagaagaaagaag |
6297626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 6297552 - 6297503
Alignment:
| Q |
142 |
ttctgatgaagtagtctgaactcagctggtgtgctaatttctaatgtgta |
191 |
Q |
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||||||||||||||||||||| |||||||||||| |||| |||| |||| |
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| T |
6297552 |
ttctgatgaagtagtctgaacagagctggtgtgctgatttgtaatatgta |
6297503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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