View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_1 (Length: 751)
Name: NF16735_low_1
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 704; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 18 - 737
Target Start/End: Complemental strand, 19578393 - 19577674
Alignment:
| Q |
18 |
aaagttagcaaacaaattaaacaagcacacaaatagaaaacatatatactaataaattaggaagacatgcatccaattccatgccttgaagtaggaaaaa |
117 |
Q |
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| T |
19578393 |
aaagttagcaaacaaattaaacaagcacacaaatagaaaacatatatactaataaattaggaagacatgcatccaattccatgccttgaagtaggaaaaa |
19578294 |
T |
|
| Q |
118 |
taaggaacaaaccgctacaaattattccaaccatcaaaggaaaactctccataacttgatccatctctttttcatgtccaggaaataaacaattagtaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19578293 |
taaggaacaaaccgctacaaattattccaaccatcaaaggaaaactctccataacttgatccatctctttttcatgtccaggaaataaacaattagtaac |
19578194 |
T |
|
| Q |
218 |
cctataatccgaaaaagcgatagccacaaacaccataaccgacataaccgcatgcacgaaatcttgaaacccaactttgtacttgtcatcattaggaacc |
317 |
Q |
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| T |
19578193 |
cctataatccgaaaaagcgatagccacaaacaccataaccgacataaccgcatgcacgaaatcttgaaacccaactttgtacttgtcatcattaggaacc |
19578094 |
T |
|
| Q |
318 |
aaaacagtgagtcccggtttaaaaaccgacaacccgttccgagtagcaaaaccatagtaaacgttaccatccgcgccgtgaaaactatcggtaaagtgaa |
417 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19578093 |
aaaacagtgagtcccggtttaaaaacagacaacccgttccgagtagcaaaaccatagtaaacgttaccatccgcgccgtgaaaactgtcggtaaagtgaa |
19577994 |
T |
|
| Q |
418 |
agaagaaacaagagagtgcacacatgattaagaggaaatggatcatgatggtatgaacatgagtgcattgaccatttcggtagattgaaggaaggaccat |
517 |
Q |
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| T |
19577993 |
agaagaaacaagagagtgcacacatgattaagaggaaatggatcatgatggtatgaacatgagtgcattgaccatttcggtagattgaaggaaggaccat |
19577894 |
T |
|
| Q |
518 |
ttcgaatgttatgagtgttcctgttggaaggaagtttccgagtaaggatgtttttgagagggttttttggacaccttttgccattatggcgcgacgtttc |
617 |
Q |
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| T |
19577893 |
ttcgaatgttatgagtgttcctgttggaaggaagtttccgagtaaggatgtttttgagagggttttttggacaccttttgccattatggcgcgacgtttc |
19577794 |
T |
|
| Q |
618 |
ttgccaggttccggtggatcggaaggctggtgtgtgacgccgcctatggcctcttgtggtggaggtgttgcattgtagactttgatcccaatttcttgtt |
717 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19577793 |
ttgccaggttccggtggatcgaaaggctggtgtgtgacgccgcctatggcctcttgtggtggaggagttgcattgtagactttgatcccaatttcttgtt |
19577694 |
T |
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| Q |
718 |
gagtttgttccatatttgat |
737 |
Q |
| |
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| T |
19577693 |
gagtttgttccatatttgat |
19577674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 61 - 737
Target Start/End: Original strand, 2787244 - 2787920
Alignment:
| Q |
61 |
atatactaataaattaggaagacatgcatccaattccatgccttgaagtaggaaaaataaggaacaaaccgctacaaattattccaaccatcaaaggaaa |
160 |
Q |
| |
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||||||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| |||||||||||||| ||||| |
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| T |
2787244 |
atatactaaaaaattaggcagacatgcatccaattccacgccttgaagttggaaaaataagaaacaaaccgctacaaacaattccaaccatcaatggaaa |
2787343 |
T |
|
| Q |
161 |
actctccataacttgatccatctctttttcatgtccaggaaataaacaattagtaaccctataatccgaaaaagcgatagccacaaacaccataaccgac |
260 |
Q |
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||||||||||||||||||||| || |||||||||||||||| ||||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
2787344 |
actctccataacttgatccatttccctttcatgtccaggaaacaaacaattactcaccctataatccgaaaaagcgatcgccacaaacaccataactgac |
2787443 |
T |
|
| Q |
261 |
ataaccgcatgcacgaaatcttgaaacccaactttgtacttgtcatcattaggaaccaaaacagtgagtcccggtttaaaaaccgacaacccgttccgag |
360 |
Q |
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| T |
2787444 |
ataactgcatgaacaaaatcttgaaaccctaccttgtatttgtcgtcgttaggaaccaaaacagcaagtcctggtttaaaaacggataaccctttcgggg |
2787543 |
T |
|
| Q |
361 |
tagcaaaaccatagtaaacgttaccatccgcgccgtgaaaactatcggtaaagtgaaagaagaaacaagagagtgcacacatgattaagaggaaatggat |
460 |
Q |
| |
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|| |||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| || ||||| ||||||||||| |
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| T |
2787544 |
taacaaaaccatagtaaacattaccatcagcgccgtgaaaactatctgtaaagtgaaaaaagaaacaagagagtgcacatataattaaaaggaaatggat |
2787643 |
T |
|
| Q |
461 |
catgatggtatgaacatgagtgcattgaccatttcggtagattgaaggaaggaccatttcgaatgttatgagtgttcctgttggaaggaagtttccgagt |
560 |
Q |
| |
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||||||||| || || ||||| ||||| || || | ||||| ||||||||||||||||||||||| | ||||||||||| |||||||||||| || ||| |
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| T |
2787644 |
catgatggtgtgtacgtgagtacattggccgttcctatagatcgaaggaaggaccatttcgaatgtgaggagtgttcctgatggaaggaagttaccaagt |
2787743 |
T |
|
| Q |
561 |
aaggatgtttttgagagggttttttggacaccttttgccattatggcgcgacgtttcttgccaggttccggtggatcggaaggctggtgtgtgacgccgc |
660 |
Q |
| |
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||||| |||||||| ||||||||||| || ||||| ||||||||||| ||||| ||||||||| ||||||||||||| |||||||| || || ||| | | |
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| T |
2787744 |
aaggaagtttttgaaagggttttttgcacgcctttcgccattatggcacgacgcttcttgccatgttccggtggatcagaaggctgctgcgttacggccc |
2787843 |
T |
|
| Q |
661 |
ctatggcctcttgtggtggaggtgttgcattgtagactttgatcccaatttcttgttgagtttgttccatatttgat |
737 |
Q |
| |
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| ||| | ||||||||||| ||||||| |||||||| |||||| |||||||||||||| |||||||||||||||||| |
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| T |
2787844 |
ccatgacttcttgtggtggcggtgttgtattgtagattttgattccaatttcttgttgtgtttgttccatatttgat |
2787920 |
T |
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