View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_10 (Length: 566)
Name: NF16735_low_10
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 260 - 558
Target Start/End: Original strand, 9864104 - 9864402
Alignment:
| Q |
260 |
ggttgattttggattgtcaatatggcagaagaaccctctcaatgtcgtgaaaagttgactaatcttactgttgaagtaggaaaaaacttttttctattta |
359 |
Q |
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| T |
9864104 |
ggttgattttggattgtcaatatggcagaagaaccctctcaatgtcgtgaaaagttgactaatctcactgttgaagtaggaaaaaacttttttctattta |
9864203 |
T |
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| Q |
360 |
tggttatggtgattatgtgcaatggtttgcattttctgacaaagccttattcacatcctcgaatcacttctgacatacttgtaagtttctatatcttaaa |
459 |
Q |
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| T |
9864204 |
tggttatggtgattatgtgcaatggtttgcattttctgacaaagccttattcacatcctcgaatcacttctgacatacttgtaagtttctatatcttaaa |
9864303 |
T |
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| Q |
460 |
tcgattttcattatatgattgtttatgctgcatataattgtttcgagtttgagatctcagcatagtcgagacgagatctctttgtccgatgatgatgtc |
558 |
Q |
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| T |
9864304 |
tcgattttcattatatgattgtttatgctgcatataattgtttcgagtttgagatctcaacatagtcgagacgagatctctttgtccgataatgatgtc |
9864402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 9863863 - 9864004
Alignment:
| Q |
19 |
ccactatcatatcaccttgtatgtctttgatgtccttagagtgctcctctattttctcctaaaacaaagctaagaaataacaaccattggctttcacaaa |
118 |
Q |
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| T |
9863863 |
ccactatcatatcaccttgtatgtctttgatgtccttagagtgctcctctattttctccttaaacaaagctaagaaataacaaccattggctttcacaaa |
9863962 |
T |
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| Q |
119 |
aacannnnnnngacaattattcaatacctaaacaaaagttac |
160 |
Q |
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| T |
9863963 |
aacatttttttgacaattattcaatacctaaacaaaagttac |
9864004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 436
Target Start/End: Complemental strand, 13955311 - 13955231
Alignment:
| Q |
356 |
tttatggttatggtgattatgtgcaatggtttgcattttctgacaaagccttattcacatcctcgaatcacttctgacata |
436 |
Q |
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| T |
13955311 |
tttatggtgatggtgattgtatgcaatggtttacattttcttctaaagccttataaacaacctcgcattacttccgacata |
13955231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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