View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16735_low_100 (Length: 243)

Name: NF16735_low_100
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16735_low_100
NF16735_low_100
[»] chr8 (5 HSPs)
chr8 (25-242)||(454486-454703)
chr8 (72-241)||(18867234-18867403)
chr8 (72-241)||(35743743-35743912)
chr8 (72-241)||(10685828-10685997)
chr8 (69-186)||(26299724-26299841)
[»] chr4 (3 HSPs)
chr4 (69-237)||(16625561-16625729)
chr4 (69-199)||(5146259-5146389)
chr4 (72-241)||(9225968-9226137)
[»] chr5 (7 HSPs)
chr5 (72-241)||(33789710-33789879)
chr5 (64-199)||(24557190-24557325)
chr5 (64-199)||(24598222-24598357)
chr5 (72-241)||(31398556-31398725)
chr5 (72-199)||(27448177-27448304)
chr5 (72-241)||(43595475-43595644)
chr5 (72-241)||(43628269-43628438)
[»] chr7 (7 HSPs)
chr7 (69-237)||(49090039-49090207)
chr7 (69-199)||(9186751-9186881)
chr7 (79-237)||(18412019-18412177)
chr7 (72-241)||(16883281-16883450)
chr7 (79-241)||(21644398-21644560)
chr7 (72-241)||(24262887-24263056)
chr7 (80-199)||(21987282-21987401)
[»] chr3 (7 HSPs)
chr3 (69-199)||(3325142-3325274)
chr3 (69-237)||(1309222-1309390)
chr3 (69-199)||(16262713-16262843)
chr3 (72-241)||(8515448-8515617)
chr3 (72-241)||(32478694-32478863)
chr3 (79-241)||(2673784-2673946)
chr3 (73-198)||(28490780-28490905)
[»] chr2 (2 HSPs)
chr2 (72-241)||(19347632-19347801)
chr2 (79-199)||(25394247-25394367)
[»] chr1 (2 HSPs)
chr1 (69-199)||(47100424-47100554)
chr1 (72-241)||(41396593-41396762)
[»] scaffold0197 (1 HSPs)
scaffold0197 (72-241)||(15873-16042)
[»] chr6 (1 HSPs)
chr6 (79-241)||(14739136-14739298)
[»] scaffold0006 (2 HSPs)
scaffold0006 (79-199)||(869-989)
scaffold0006 (79-199)||(9025-9145)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 454703 - 454486
Alignment:
Q  25 ccccgtgattaagtatctaaagaagaatccaaaaatccaaatgtataccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaa 124  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||    
T  454703 ccccgtgagtaagtatctaaagaagaatccaaaaatccgaatgtataccactttcaaacttcactctatgttgtttgtctagtatgcaatgattgcgaaa 454604  T
Q  125 ttctagcttatctaaattttctcttcctaaaaaatcttgttttgctagttctactaaacctctttcactgacatgttgtcaccttgaatgccacaattca 224  Q
    |||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  454603 ttctagcttatccaaattttctcttcctaaaaaaccttgtttggctagttctactaaacctctttcactaacatgttgtcaccttaaatgccacaattca 454504  T
Q  225 aatttattatgagatgct 242  Q
    ||||||||||||||||||    
T  454503 aatttattatgagatgct 454486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 241
Target Start/End: Complemental strand, 18867403 - 18867234
Alignment:
Q  72 ccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgcta 171  Q
    |||||| |||||||||| ||||||| |||  |||||||| |||| |  | |||||||||||| || || || ||| | ||||  ||| ||||||| ||||    
T  18867403 ccacttccaaacttcaccctatgttgttttcctagtatgcaatgctcacaaaattctagcttgtccaatttatctttccctagcaaaccttgtttagcta 18867304  T
Q  172 gttctactaaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgagatgc 241  Q
    |||| |||||||| |||||||| |||||     ||||  |||||||||||||| | ||||||||||||||    
T  18867303 gttcaactaaacccctttcactaacatgccccaacctcaaatgccacaattcagaattattatgagatgc 18867234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 35743743 - 35743912
Alignment:
Q  72 ccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgcta 171  Q
    |||||| |||||||||| ||||||| |||| |||||||| |||| |  | ||||||||||||||| || || ||| | ||||  ||| ||||||| ||||    
T  35743743 ccacttccaaacttcaccctatgttgtttgcctagtatgcaatgttcacaaaattctagcttatccaatttatctttccctagcaaaccttgtttagcta 35743842  T
Q  172 gttctactaaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgagatgc 241  Q
    |||| |||||||| || ||||| |||||     | ||  |||||||||||||| | ||||||||||||||    
T  35743843 gttcaactaaacccctctcactaacatgccccaatctcaaatgccacaattcagaattattatgagatgc 35743912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 241
Target Start/End: Complemental strand, 10685997 - 10685828
Alignment:
Q  72 ccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgcta 171  Q
    |||||| |||||||||| ||||||| |||| |||||||| |||| |  | |||||||||||| || || || ||| | ||||  ||| ||||||| ||||    
T  10685997 ccacttccaaacttcaccctatgttgtttgcctagtatgcaatgttcacaaaattctagcttgtccaatttatctttccctagcaaaccttgtttagcta 10685898  T
Q  172 gttctactaaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgagatgc 241  Q
    |||| |||||||| || ||||| |||||     | ||  |||||||||||||| | ||||||||||||||    
T  10685897 gttcaactaaacccctctcactaacatgccccaatctcaaatgccacaattcagaattattatgagatgc 10685828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 26299724 - 26299841
Alignment:
Q  69 ataccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttg 168  Q
    ||||||||  ||||||| ||| ||||||  ||| |||||||| |||| |  | |||||||||||| || || || ||| ||||||  ||| |||||||||    
T  26299724 ataccactaccaaactttactttatgttgcttgcctagtatgcaatgctcacaaaattctagcttgtccaatttatcttttcctatcaaaccttgttttg 26299823  T
Q  169 ctagttctactaaacctc 186  Q
    ||| ||| ||||||||||    
T  26299824 ctaattcaactaaacctc 26299841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 237
Target Start/End: Complemental strand, 16625729 - 16625561
Alignment:
Q  69 ataccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttg 168  Q
    ||||||||  ||||||| ||||||||||  ||| |||||||| |||| |  | |||||||||||| || || || ||| ||||||  ||| ||||||| |    
T  16625729 ataccactaccaaactttactctatgttgcttgcctagtatgcaatgctcacaaaattctagcttgtccaatttatcttttcctagcaaaccttgtttag 16625630  T
Q  169 ctagttctactaaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgag 237  Q
    ||||||| ||||||||||||||||| |||||     | ||| |||||||||||||||| ||||||||||    
T  16625629 ctagttcaactaaacctctttcactaacatgccccaatcttaaatgccacaattcaaaattattatgag 16625561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 199
Target Start/End: Original strand, 5146259 - 5146389
Alignment:
Q  69 ataccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttg 168  Q
    ||||||||  ||||||| ||||||||||  ||| |||||||| |||| |  | |||||||| ||| || || || ||| ||  ||  ||||||||||| |    
T  5146259 ataccactaccaaactttactctatgttgcttgcctagtatgcaatgctcacaaaattctaacttgtccaatttatctttttttagcaaatcttgtttag 5146358  T
Q  169 ctagttctactaaacctctttcactgacatg 199  Q
    ||||||| ||||||||||||||||| |||||    
T  5146359 ctagttcaactaaacctctttcactaacatg 5146389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 241
Target Start/End: Complemental strand, 9226137 - 9225968
Alignment:
Q  72 ccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgcta 171  Q
    |||||| |||||||||| ||||||| |||| |||||||| |||| |  | |||||||||||| |  || || ||| | ||||  ||| ||||||| ||||    
T  9226137 ccacttccaaacttcaccctatgttgtttgcctagtatgcaatgctcacaaaattctagcttgttcaatttatctttccctagcaaaccttgtttagcta 9226038  T
Q  172 gttctactaaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgagatgc 241  Q
    |||| |||||||| || ||||| |||||     | ||  |||||||||||||| | ||||||||||||||    
T  9226037 gttcaactaaacccctctcactaacatgccccaatctcaaatgccacaattcagaattattatgagatgc 9225968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 33789710 - 33789879
Alignment:
Q  72 ccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgcta 171  Q
    |||||| |||||||||| ||||||| |||| |||||||| |||| || | ||||||||||||||| || || ||| | ||||  ||| ||||||| ||||    
T  33789710 ccacttccaaacttcaccctatgttgtttgcctagtatgcaatgtttacaaaattctagcttatccaatttatctttccctagcaaaccttgtttagcta 33789809  T
Q  172 gttctactaaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgagatgc 241  Q
    |||| |||||||| || ||||| |||||     | ||  |||||||||||||| | ||||||||||||||    
T  33789810 gttcaactaaacccctctcactaacatgccccaatctcaaatgccacaattcagaattattatgagatgc 33789879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 199
Target Start/End: Complemental strand, 24557325 - 24557190
Alignment:
Q  64 aatgtataccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttg 163  Q
    |||| |||||||| |||||||| || |||||||  ||  |||||||| |||| |  | |||||||||||| ||||| || ||| ||||||  ||| ||||    
T  24557325 aatgcataccactatcaaacttgaccctatgttgctttcctagtatgcaatgctcacaaaattctagcttgtctaatttatcttttcctagcaaaccttg 24557226  T
Q  164 ttttgctagttctactaaacctctttcactgacatg 199  Q
    ||| |||||||| |||||| |||||||||| |||||    
T  24557225 tttagctagttcaactaaatctctttcactaacatg 24557190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 199
Target Start/End: Complemental strand, 24598357 - 24598222
Alignment:
Q  64 aatgtataccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttg 163  Q
    |||| |||||||| |||||||| || |||||||  ||  |||||||| |||| |  | |||||||||||| ||||| || ||| ||||||  ||| ||||    
T  24598357 aatgcataccactatcaaacttgaccctatgttgctttcctagtatgcaatgctcacaaaattctagcttgtctaatttatcttttcctagcaaaccttg 24598258  T
Q  164 ttttgctagttctactaaacctctttcactgacatg 199  Q
    ||| |||||||| |||||| |||||||||| |||||    
T  24598257 tttagctagttcaactaaatctctttcactaacatg 24598222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 241
Target Start/End: Complemental strand, 31398725 - 31398556
Alignment:
Q  72 ccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgcta 171  Q
    |||||| |||||||||| ||||||| |||| |||||||| |||| |  | |||||||||||| || || || ||| | ||||  ||| ||||||| ||||    
T  31398725 ccacttccaaacttcaccctatgttgtttgcctagtatgcaatgttcacaaaattctagcttgtccaatttatctttccctagcaaaccttgtttagcta 31398626  T
Q  172 gttctactaaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgagatgc 241  Q
    |||| |||||||| || ||||| |||||     | ||  |||||||||||||| | ||||||||||||||    
T  31398625 gttcaactaaacccctctcactaacatgccccaatctcaaatgccacaattcagaattattatgagatgc 31398556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 27448177 - 27448304
Alignment:
Q  72 ccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgcta 171  Q
    |||||| |||||||||| ||||||| |||| |||||||| |||| |  | |||||||||||| || || || ||| | ||||  ||| ||||||| ||||    
T  27448177 ccacttccaaacttcaccctatgttgtttgcctagtatgcaatgctcacaaaattctagcttgtccaatttatctttccctagcaaaccttgtttagcta 27448276  T
Q  172 gttctactaaacctctttcactgacatg 199  Q
    |||| |||||||| || ||||| |||||    
T  27448277 gttcaactaaacccctctcactaacatg 27448304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 43595475 - 43595644
Alignment:
Q  72 ccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgcta 171  Q
    |||||| |||||||||| ||||||| ||||  ||||||| |||| |  | |||||||||||| || || || ||| | ||||  ||| ||||||| ||||    
T  43595475 ccacttccaaacttcaccctatgttgtttgcttagtatgcaatgctcacaaaattctagcttgtccaatttatctttccctagcaaaccttgtttagcta 43595574  T
Q  172 gttctactaaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgagatgc 241  Q
    |||| |||||||| || ||||  |||||     | ||  |||||||||||||| | ||||||||||||||    
T  43595575 gttcaactaaacccctctcacgaacatgccccaatctcaaatgccacaattcagaattattatgagatgc 43595644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 43628269 - 43628438
Alignment:
Q  72 ccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgcta 171  Q
    |||||| |||||||||| ||||||| ||||  ||||||| |||| |  | |||||||||||| || || || ||| | ||||  ||| ||||||| ||||    
T  43628269 ccacttccaaacttcaccctatgttgtttgcttagtatgcaatgctcacaaaattctagcttgtccaatttatctttccctagcaaaccttgtttagcta 43628368  T
Q  172 gttctactaaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgagatgc 241  Q
    |||| |||||||| || ||||  |||||     | ||  |||||||||||||| | ||||||||||||||    
T  43628369 gttcaactaaacccctctcacgaacatgccccaatctcaaatgccacaattcagaattattatgagatgc 43628438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 69 - 237
Target Start/End: Original strand, 49090039 - 49090207
Alignment:
Q  69 ataccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttg 168  Q
    ||||||||  ||||||| ||||||||||  ||| |||||||| |||| || | |||||||||||| || || || ||| ||||||  ||| ||||||| |    
T  49090039 ataccactaccaaactttactctatgttgcttgcctagtatgcaatgcttacaaaattctagcttgtccaatttatcttttcctagcaaaccttgtttag 49090138  T
Q  169 ctagttctactaaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgag 237  Q
     |||||| ||||||||||||||||| ||||| |   | ||  |||||||||||||| | ||||||||||    
T  49090139 ttagttcaactaaacctctttcactaacatgctccaatctcaaatgccacaattcagaattattatgag 49090207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 9186881 - 9186751
Alignment:
Q  69 ataccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttg 168  Q
    ||||||||  ||||||| ||||||||||  ||| |||||||| |||| |  | |||||||||||| || || || ||| || ||| |||| ||||||| |    
T  9186881 ataccactaccaaactttactctatgttgcttgcctagtatgcaatgctcacaaaattctagcttgtccaatttatcttttactagaaaaccttgtttag 9186782  T
Q  169 ctagttctactaaacctctttcactgacatg 199  Q
    ||||||| ||||||||||||||||| |||||    
T  9186781 ctagttcaactaaacctctttcactaacatg 9186751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 237
Target Start/End: Original strand, 18412019 - 18412177
Alignment:
Q  79 caaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgctagttctac 178  Q
    ||||||| ||||||||||  ||| |||||||| |||| |  | |||||||||||| || || || ||| ||||||  ||| ||||||| |||||||| ||    
T  18412019 caaactttactctatgttgcttgcctagtatgcaatgctcacaaaattctagcttgtccaatttatcttttcctagcaaaccttgtttagctagttcaac 18412118  T
Q  179 taaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgag 237  Q
    ||||||||||||||| |||||     ||||  |||||||||||||| | ||||||||||    
T  18412119 taaacctctttcactaacatgccccaacctcaaatgccacaattcagaattattatgag 18412177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 16883281 - 16883450
Alignment:
Q  72 ccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgcta 171  Q
    |||||| |||||||||| ||||||| |||| |||||||| |||| |  | ||||||||||||||| || || ||| | ||||  ||| ||||||| ||||    
T  16883281 ccacttccaaacttcaccctatgttgtttgcctagtatgcaatgttcacaaaattctagcttatccaatttatctttccctagcaaaccttgtttagcta 16883380  T
Q  172 gttctactaaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgagatgc 241  Q
    |||| |||||||| || ||||| |||||     | ||  |||||||||||||| | ||||||||||||||    
T  16883381 gttcaactaaacccctctcactaacatgccccaatctcaaatgccacaattcagaattattatgagatgc 16883450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 241
Target Start/End: Original strand, 21644398 - 21644560
Alignment:
Q  79 caaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgctagttctac 178  Q
    ||||||||||| ||||||  ||| |||||||| | || |  | |||||||||||| || || || ||| | ||||  ||||||||||| |||||||| ||    
T  21644398 caaacttcactatatgttgcttgcctagtatgcattgctcacaaaattctagcttgtccaatttatctttccctagcaaatcttgtttagctagttcaac 21644497  T
Q  179 taaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgagatgc 241  Q
    |||| |||||||||| |||||     ||||  |||||||||||||| | ||||||||||||||    
T  21644498 taaatctctttcactaacatgccccaacctcaaatgccacaattcagaattattatgagatgc 21644560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 241
Target Start/End: Complemental strand, 24263056 - 24262887
Alignment:
Q  72 ccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgcta 171  Q
    |||||| |||||||||| ||||||| |||| |||||||| |||| |  | |||||||||||| || || || ||| | ||||  ||| ||||||| ||||    
T  24263056 ccacttccaaacttcaccctatgttgtttgcctagtatgcaatgttcacaaaattctagcttgtccaatttatctttccctagcaaaccttgtttagcta 24262957  T
Q  172 gttctactaaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgagatgc 241  Q
    |||| |||||||| || ||||| |||||     | ||  |||||||||||||| | ||||||||||||||    
T  24262956 gttcaactaaacccctctcactaacatgccccaatctcaaatgccacaattcagaattattatgagatgc 24262887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 199
Target Start/End: Original strand, 21987282 - 21987401
Alignment:
Q  80 aaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgctagttctact 179  Q
    |||||| |||||| ||| |||| |||||||| |||| || | |||||||||||| || ||  | ||| ||||||  ||| ||||||| |||||||  |||    
T  21987282 aaactttactctacgttgtttgcctagtatgcaatgcttacaaaattctagcttgtccaatgtatcttttcctagcaaaccttgtttagctagtttaact 21987381  T
Q  180 aaacctctttcactgacatg 199  Q
    |||||||||||||| |||||    
T  21987382 aaacctctttcactaacatg 21987401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 3325274 - 3325142
Alignment:
Q  69 ataccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttg 168  Q
    ||||||||  ||||||| ||||||||||  ||| |||||||| |||| |  | |||||||||||| || || || ||| ||||||| ||||||||||| |    
T  3325274 ataccactaccaaactttactctatgttgcttgcctagtatgcaatgctcacaaaattctagcttgtccaatttatcttttcctaacaaatcttgtttag 3325175  T
Q  169 ctagttctac--taaacctctttcactgacatg 199  Q
    ||||||| ||  ||||||||||||||| |||||    
T  3325174 ctagttcaactataaacctctttcactaacatg 3325142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 237
Target Start/End: Original strand, 1309222 - 1309390
Alignment:
Q  69 ataccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttg 168  Q
    ||||||||  ||||||| ||||||||||  ||  |||||||| |||| |  | |||||||||||| || || || ||| ||||||  ||| ||||||| |    
T  1309222 ataccactaccaaactttactctatgttgctttcctagtatgcaatgctcacaaaattctagcttgtccaatttatcttttcctagcaaaccttgtttag 1309321  T
Q  169 ctagttctactaaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgag 237  Q
    ||||||| ||||||||||||||||| |||||     ||||  |||||||||||||| | ||||||||||    
T  1309322 ctagttcaactaaacctctttcactaacatgcctcaacctcaaatgccacaattcagaattattatgag 1309390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 199
Target Start/End: Original strand, 16262713 - 16262843
Alignment:
Q  69 ataccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttg 168  Q
    ||||||||  ||||||| ||||||||||   || |||||||| |||| |  | |||||||||||| || || || | | |||||| |||| ||||||| |    
T  16262713 ataccactaccaaactttactctatgttgcctgcctagtatgcaatgctcacaaaattctagcttgtccaatttattttttcctagaaaaccttgtttgg 16262812  T
Q  169 ctagttctactaaacctctttcactgacatg 199  Q
    ||||||| ||||||||||||||||| |||||    
T  16262813 ctagttcaactaaacctctttcactaacatg 16262843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 8515448 - 8515617
Alignment:
Q  72 ccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgcta 171  Q
    |||||| |||||||||| ||||||| |||| |||||||| |||| |  | |||||||||||| || || || ||| | ||||  ||| ||||||| ||||    
T  8515448 ccacttccaaacttcaccctatgttgtttgcctagtatgcaatgttcacaaaattctagcttgtccaatttatctttccctagcaaaccttgtttagcta 8515547  T
Q  172 gttctactaaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgagatgc 241  Q
    |||| |||||||| || ||||| |||||     | ||  |||||||||||||| | ||||||||||||||    
T  8515548 gttcaactaaacccctctcactaacatgccccaatctcaaatgccacaattcagaattattatgagatgc 8515617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 32478694 - 32478863
Alignment:
Q  72 ccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgcta 171  Q
    |||||| |||||||||| ||||||| |||| |||||||| |||| |  | |||||||||||| || || || ||| | ||||  ||| ||||||| ||||    
T  32478694 ccacttccaaacttcaccctatgttgtttgcctagtatgcaatgttcacaaaattctagcttgtccaatttatctttccctagcaaaccttgtttagcta 32478793  T
Q  172 gttctactaaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgagatgc 241  Q
    |||| |||||||| || ||||| |||||     | ||  |||||||||||||| | ||||||||||||||    
T  32478794 gttcaactaaacccctctcactaacatgccccaatctcaaatgccacaattcagaattattatgagatgc 32478863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 241
Target Start/End: Complemental strand, 2673946 - 2673784
Alignment:
Q  79 caaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgctagttctac 178  Q
    |||||||||| ||||||| |||| |||||||| |||| |  | |||||||||||| || || || ||| | ||||  ||| ||||||| |||||||| ||    
T  2673946 caaacttcaccctatgttgtttgcctagtatgcaatgttcacaaaattctagcttgtccaatttatctttccctagcaaaccttgtttagctagttcaac 2673847  T
Q  179 taaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgagatgc 241  Q
    |||||| || ||||| |||||     | ||  |||||||||||||| | ||||||||||||||    
T  2673846 taaacccctctcactaacatgccccaatctcaaatgccacaattcagaattattatgagatgc 2673784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 28490905 - 28490780
Alignment:
Q  73 cactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgctag 172  Q
    ||||| |||||||||| ||||||| |||| |||||||| |||| |  | |||||||||||| |  || || ||| | ||||  ||| ||||||| |||||    
T  28490905 cacttccaaacttcaccctatgttgtttgcctagtatgcaatgctcacaaaattctagcttgtacaatttatctttccctagcaaaccttgtttagctag 28490806  T
Q  173 ttctactaaacctctttcactgacat 198  Q
    ||| |||||||| || ||||| ||||    
T  28490805 ttcaactaaacccctctcactaacat 28490780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 19347632 - 19347801
Alignment:
Q  72 ccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgcta 171  Q
    |||||| |||||||||| ||||||| |||| |||||||| |||| |  | ||||||||||||||| || || ||| | ||||  ||| ||||||| ||||    
T  19347632 ccacttccaaacttcaccctatgttgtttgcctagtatgcaatgttcacaaaattctagcttatccaatttatctttccctagcaaaccttgtttagcta 19347731  T
Q  172 gttctactaaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgagatgc 241  Q
    |||| |||||||| || ||||| |||||     | ||  |||||||||||||| | ||||||||||||||    
T  19347732 gttcaactaaacccctctcactaacatgccccaatctcaaatgccacaattcagaattattatgagatgc 19347801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 25394247 - 25394367
Alignment:
Q  79 caaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgctagttctac 178  Q
    ||||||| ||||||||||  ||| |||| ||| |||| | || |||||||||||| || || || ||| ||||||  ||| ||||||| |||||||| ||    
T  25394247 caaactttactctatgttgcttgcctagcatgcaatgctcgcaaaattctagcttgtccaatttatcttttcctagcaaaccttgtttagctagttcaac 25394346  T
Q  179 taaacctctttcactgacatg 199  Q
    ||||||||||||||| |||||    
T  25394347 taaacctctttcactaacatg 25394367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 47100554 - 47100424
Alignment:
Q  69 ataccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttg 168  Q
    ||||||||  ||||||| ||||||||||  ||| ||| |||| |||| |  | |||||||||||| || || || ||| ||||||  ||| ||||||| |    
T  47100554 ataccactaccaaactttactctatgttgcttgcctaatatgcaatgttcacaaaattctagcttgtccaatttatcttttcctagcaaaccttgtttag 47100455  T
Q  169 ctagttctactaaacctctttcactgacatg 199  Q
    ||||||| ||||||||||||||||| |||||    
T  47100454 ctagttcaactaaacctctttcactaacatg 47100424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 41396593 - 41396762
Alignment:
Q  72 ccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgcta 171  Q
    |||||| |||||||||| ||||||| |||| |||||||| |||| |  | |||||||||||| || || || ||| | ||||  ||| ||||||| ||||    
T  41396593 ccacttccaaacttcaccctatgttgtttgcctagtatgcaatgctcacaaaattctagcttgtccaatttatctttccctagcaaaccttgtttagcta 41396692  T
Q  172 gttctactaaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgagatgc 241  Q
    |||| |||||||| || ||||| |||||     | ||  |||||||||||||| | ||||||||||||||    
T  41396693 gttcaactaaacccctctcactaacatgccccaatctcaaatgccacaattcagaattattatgagatgc 41396762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 241
Target Start/End: Complemental strand, 16042 - 15873
Alignment:
Q  72 ccactttcaaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgcta 171  Q
    |||||| |||||||||| ||||||| |||| |||||||| |||| |  | |||||||||||| || || || ||| | ||||  ||| ||||||| ||||    
T  16042 ccacttccaaacttcaccctatgttgtttgcctagtatgcaatgttcacaaaattctagcttgtccaatttatctttccctagcaaaccttgtttagcta 15943  T
Q  172 gttctactaaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgagatgc 241  Q
    |||| |||||||| || ||||| |||||     | ||  |||||||||||||| | ||||||||||||||    
T  15942 gttcaactaaacccctctcactaacatgccccaatctcaaatgccacaattcagaattattatgagatgc 15873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 241
Target Start/End: Complemental strand, 14739298 - 14739136
Alignment:
Q  79 caaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgctagttctac 178  Q
    |||||||||| ||||||| |||| |||||||| |||| |  | |||||||||||| || || || ||| | ||||  ||| ||||||| |||||||| ||    
T  14739298 caaacttcaccctatgttgtttgcctagtatgcaatgctcacaaaattctagcttgtccaatttatctttccctagcaaaccttgtttagctagttcaac 14739199  T
Q  179 taaacctctttcactgacatgttgtcaccttgaatgccacaattcaaatttattatgagatgc 241  Q
    |||||| || ||||| |||||     | ||  |||||||||||||| | ||||||||||||||    
T  14739198 taaacccctctcactaacatgccccaatctcaaatgccacaattcagaattattatgagatgc 14739136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 869 - 989
Alignment:
Q  79 caaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgctagttctac 178  Q
    ||||||| ||||||||||  |||  ||||||| |||| |  | |||||||||||| || || || ||| ||||||  ||| | ||||| |||||||| ||    
T  869 caaactttactctatgtttcttgcttagtatgcaatgctcacaaaattctagcttgtccaatttatcttttcctagcaaaccctgtttagctagttcaac 968  T
Q  179 taaacctctttcactgacatg 199  Q
    ||||||||||||||| |||||    
T  969 taaacctctttcactaacatg 989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 9025 - 9145
Alignment:
Q  79 caaacttcactctatgttatttgtctagtatgtaatgattgctaaattctagcttatctaaattttctcttcctaaaaaatcttgttttgctagttctac 178  Q
    ||||||| ||||||||||  |||  ||||||| |||| |  | |||||||||||| || || || ||| ||||||  ||| | ||||| |||||||| ||    
T  9025 caaactttactctatgtttcttgcttagtatgcaatgctcacaaaattctagcttgtccaatttatcttttcctagcaaaccctgtttagctagttcaac 9124  T
Q  179 taaacctctttcactgacatg 199  Q
    ||||||||||||||| |||||    
T  9125 taaacctctttcactaacatg 9145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University