View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_103 (Length: 238)
Name: NF16735_low_103
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_103 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 41812503 - 41812716
Alignment:
| Q |
17 |
gaatcatctcaaagactcaaaggggccagagaggagcttaaatcctttcatatattttttatgcaaattttcccagttaggtatagtcgtgattcagcat |
116 |
Q |
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| T |
41812503 |
gaatcatctcaaagactcaaaggggccagagagaagcttaaatcctttcatatattttttatgcaaattttcccagttaggtatagtcgtgattcagcat |
41812602 |
T |
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| Q |
117 |
ataatcagctcattttttctttctgtgaattgattcttttgttttaaaaacactggtatgtgtgtataatttgatttttcctgtatcatgagcagagtta |
216 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
41812603 |
ataatcagctcattttttctctctgtgaattgattcttttgttttaaaaacactggtatgtgtgtataatttgatttttccagtatcgtgagcagagtta |
41812702 |
T |
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| Q |
217 |
gttctgttcatctc |
230 |
Q |
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||||||||| |||| |
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| T |
41812703 |
gttctgttcttctc |
41812716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 41799288 - 41799430
Alignment:
| Q |
18 |
aatcatctcaaagactcaaaggggccagagaggagcttaaatcctttcatatatttttt-atgcaaattttcccagttaggtatagtcgtgattcagcat |
116 |
Q |
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|||||| |||||||| | ||||||||||||| ||| ||| ||||| |||||||||| || ||| ||| ||||||||||| || |||||| || |
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| T |
41799288 |
aatcatatcaaagacacgcaggggccagagagcagcataagtccttctgtatatttttttattcaactttgtccagttaggtaatgttgtgatttgatat |
41799387 |
T |
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| Q |
117 |
ataatcagctcattttttctttctgtgaattgattcttttgtttt |
161 |
Q |
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|||| ||||||| |||| ||||||||||||||||||||||||| |
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| T |
41799388 |
ataaatagctcatatttt--ttctgtgaattgattcttttgtttt |
41799430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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