View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_105 (Length: 237)
Name: NF16735_low_105
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_105 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 968965 - 969181
Alignment:
| Q |
6 |
aacaagagatttgactgcagtttatatattaatttatgcttactataattgttttgtactgattattggttacttcttggataattgttaatgaatggtc |
105 |
Q |
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| T |
968965 |
aacaagagatttgattgcagtttatatattaatttatgcttactataattgttttgtactgattattggttacttcctggataattgttaatgaatggtc |
969064 |
T |
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| Q |
106 |
atttgaatttgcagtttgagaaattattgttattttcatttatttgcttgatataaggttgtttgtgatttttatcctctttatagaccaattgaatata |
205 |
Q |
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| T |
969065 |
atttgaatctgcagtttgagaaattattgttattttcatttattttcttgatataagggtgtttgtgatttttatcctctttatagaccaattgaatata |
969164 |
T |
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| Q |
206 |
tattgaaagcagaattt |
222 |
Q |
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| T |
969165 |
tattgaaagcagaattt |
969181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 1940275 - 1940182
Alignment:
| Q |
58 |
tttgtactgattattggttacttcttggataattgttaatgaatggtcatttgaatttgcagtttgagaaattattgttattttcatttatttg |
151 |
Q |
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| T |
1940275 |
tttgttctgattattggttacttcatggatcattgtcaagtaatgtccatttgaatatgtagcttgagaaattgtagttatttttacttatttg |
1940182 |
T |
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