View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_106 (Length: 236)
Name: NF16735_low_106
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_106 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 11105136 - 11104915
Alignment:
| Q |
1 |
ttaacaagccatcttttgatccaccacgagctaatccagcggagttaccatttacaaaattacattgcaacctaatctccccttcatcaccagctaacac |
100 |
Q |
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| T |
11105136 |
ttaacaagccatcttttgatccaccacgagctaatccagcggagttaccatttacaaaattacattgcaacctaatctccccttcatcaccagttaacac |
11105037 |
T |
|
| Q |
101 |
cccaatattcgccattttaatcatcgaaaccctaaaattctgaaagaagagagattggttattgctaaagctgttaacaatagcaatggtgtctgcatta |
200 |
Q |
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| T |
11105036 |
tccaatattcgccattttaatcatcgaaaccctaaaattcagaaagaagagagattggttattgctaaagctattaacaatagcaatggtgtctgcatta |
11104937 |
T |
|
| Q |
201 |
ggagtggagaatagaacttgat |
222 |
Q |
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|||||||| ||||||||||||| |
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| T |
11104936 |
ggagtggataatagaacttgat |
11104915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 11098110 - 11097907
Alignment:
| Q |
10 |
catcttttgatccaccacgagctaatccagcggagttaccatttacaaaattacattgcaacctaatctccccttcatcaccagctaacaccccaatatt |
109 |
Q |
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||||||||||| |||||| || |||||||| ||| | |||| | ||||||||||||||||||||| |||||||||| ||| | || ||| | |||||| |
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| T |
11098110 |
catcttttgatgcaccaccagataatccagaggaatctgcattaataaaattacattgcaacctaatttccccttcattaccggttagcacactaatatt |
11098011 |
T |
|
| Q |
110 |
cgccattttaatcatcgaaaccctaaaattctgaaagaagagagattggttattgctaaagctgttaacaatagcaatggtgtctgcattaggagtggag |
209 |
Q |
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|||||||||||||| || ||||||||||||| ||||||||||| |||||| | |||||||| ||||||||||||||||| |||||||||||||| ||| |
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| T |
11098010 |
agccattttaatcatggacaccctaaaattctcaaagaagagagcttggttgctactaaagctattaacaatagcaatggtatctgcattaggagttgag |
11097911 |
T |
|
| Q |
210 |
aata |
213 |
Q |
| |
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|||| |
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| T |
11097910 |
aata |
11097907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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