View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_110 (Length: 226)
Name: NF16735_low_110
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_110 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 2518485 - 2518688
Alignment:
| Q |
18 |
aatctcggtccaaaacatttaaggttgagattagtcatgtatctaaaattccgttacaagaaattacagatgccttgagaggtcaggaatctgaacacta |
117 |
Q |
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| T |
2518485 |
aatctcggtccaaaacatttaaggttgagattagtcatgtatctaaaattccgttacaagaaattacagatgccttgagaggtcaggaatctgaacacta |
2518584 |
T |
|
| Q |
118 |
tcaggaagcatttaatttccttgacacaatactgaggcagaatgcagcaaaacagtatgtccaaataaacaaatcttagatcctttttgtttttcttctc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2518585 |
tcaggaagcatttaatttccttgacacaatactgaggcagaatgcagcaaaacagtatgtccaaataaacaaatcttagatcctttttgtttttgttcta |
2518684 |
T |
|
| Q |
218 |
tctc |
221 |
Q |
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|||| |
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| T |
2518685 |
tctc |
2518688 |
T |
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