View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_112 (Length: 222)
Name: NF16735_low_112
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_112 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 2019990 - 2019802
Alignment:
| Q |
13 |
catagggcatttagagcaattattaaagtttggattttgctaacatgcgcacttaggggcacttgttaaagaataaaaactaaaagtttgtgataaaaaa |
112 |
Q |
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| T |
2019990 |
catagggcatttagagcaattattaaagtttggattttgctaacatgcgcacttaggggcacttgttaaagaataaaaactaaaagtttgtgataaaaaa |
2019891 |
T |
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| Q |
113 |
gacaatttgtaaactctcaagaaattaaatataccatttccaatataatgtttcaaaatttagttcattaacaaattccctatgctaacatgt |
205 |
Q |
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| T |
2019890 |
gacaatttgtaaactctcaagaaattaaatataccatttccaatat----tttcaaaatttagttcattaacaaattccctatgctaacatgt |
2019802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 2036712 - 2036526
Alignment:
| Q |
15 |
tagggcatttagagcaattattaaagtttggattttgctaacatgcgcacttaggggcacttgttaaagaataaaaactaaaagtttgtgataaaaaaga |
114 |
Q |
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| T |
2036712 |
tagggcacttagagcaatgattaaagtt-ggattttgctaacatgctctcttaggg-cacttgttaaagaatacaaattaaaagtttgtgttaaaaaaga |
2036615 |
T |
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| Q |
115 |
caatttgtaaactctcaagaaattaaatataccatttccaatataatgtttcaaaatttagttcattaacaaattccctatgctaacat |
203 |
Q |
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| T |
2036614 |
caatttgtaaactttcaagaaattaaatatacaatttcacatataatgtttcaaaatttagttcattaacaaattccctatgctaacat |
2036526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 1994599 - 1994504
Alignment:
| Q |
99 |
tttgtgataaaaaagacaatttgtaaactctcaagaaattaaatataccatttccaatataatgtttcaaaatttagttcattaacaaattcccta |
194 |
Q |
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| T |
1994599 |
tttgtgatgaaaaagataatttaaaaaatttcaagaaatgaaatacaccatttccaatataatgtttcaatatttagttcattaacacattcccta |
1994504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 35315715 - 35315675
Alignment:
| Q |
49 |
ttgctaacatgcgcacttaggggcacttgttaaagaataaa |
89 |
Q |
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| T |
35315715 |
ttgctaacatgtgcccttaggggcacttgttaaggaataaa |
35315675 |
T |
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