View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_113 (Length: 219)
Name: NF16735_low_113
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_113 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 5437547 - 5437734
Alignment:
| Q |
15 |
ataggaagctgaagagagtgtcaacaaaatcttttgttgcttccacaaaaacaactttgcttctttgtttgtccactaatattttgaggggaatcgattt |
114 |
Q |
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| T |
5437547 |
ataggaagctgaatagagtgtcaacaaaatcttttgttgcttccacaaaaacaactttgcttctttgtttgtccactaatattttgaggggaatcgattt |
5437646 |
T |
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| Q |
115 |
tgacttttgttgagaagccatggaagcaagttgtagagctcaaaataaaaacttagaacattgtaatgcattggagtattggataagt |
202 |
Q |
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| T |
5437647 |
tgactcttgttgagaagccatggaagcaagttgtagagctcaaaataaaaacttagaacattgtaatgcattggagtattggataagt |
5437734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 5458845 - 5458938
Alignment:
| Q |
15 |
ataggaagctgaagagagtgtcaacaaaatcttttgttgcttccacaaaaacaactttgcttctttgtttgtccactaatattttgaggggaat |
108 |
Q |
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| T |
5458845 |
ataggaagctgaagatagtgtcaacaaagtcctttgttgcttccacaaaaacaactttgtttctttgtttgtccactaagattttcaggggaat |
5458938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 5487194 - 5487106
Alignment:
| Q |
15 |
ataggaagctgaagagagtgtcaacaaaatcttttgttgcttccacaaaaacaactttgcttctttgtttgtccactaatattttgagg |
103 |
Q |
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| T |
5487194 |
ataggaaactgaagagagtgtcaacaaaatcttttgttgcttccacgaaaacaactttgtttctttgtttgtccactaacactttgagg |
5487106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 5508431 - 5508327
Alignment:
| Q |
15 |
ataggaagctgaagagagtgtcaacaaaatcttttgttgcttccacaaaaacaactttgcttctttgtttgtccactaatattttgaggggaatcgattt |
114 |
Q |
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||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||||| || ||| |
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| T |
5508431 |
ataggaagctgaaaagagtctcaacaaagtcttttgttgcttccacaaaaacaactttgttgctttgtttgtctaccgtgattttgaggggaaacgtttt |
5508332 |
T |
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| Q |
115 |
tgact |
119 |
Q |
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||||| |
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| T |
5508331 |
tgact |
5508327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 5447781 - 5447867
Alignment:
| Q |
15 |
ataggaagctgaagagagtgtcaacaaaatcttttgttgcttccacaaaaacaactttgcttctttgtttgtccactaatattttga |
101 |
Q |
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| T |
5447781 |
ataggaagctgaaaagagtgtcaacaaagtccttttttgcttccacaaatacaactttgttgctttgtttatgcaccaagattttga |
5447867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 14684 - 14573
Alignment:
| Q |
15 |
ataggaagctgaagagagtgtcaacaaaatcttttgttgcttccacaaaaacaactttgcttctttgtttgtccactaatattttgaggggaatcgattt |
114 |
Q |
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||||||||||||| ||||| |||||| | ||||| ||||||||||||||||||| || | ||||||||||||| ||| || || |||||||| | | | |
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| T |
14684 |
ataggaagctgaaaagagtctcaacatagatttttgctgcttccacaaaaacaactctgttgctttgtttgtccattaagatctttaggggaattgttgt |
14585 |
T |
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| Q |
115 |
tgacttttgttg |
126 |
Q |
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|||||||||||| |
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| T |
14584 |
tgacttttgttg |
14573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 1213521 - 1213410
Alignment:
| Q |
15 |
ataggaagctgaagagagtgtcaacaaaatcttttgttgcttccacaaaaacaactttgcttctttgtttgtccactaatattttgaggggaatcgattt |
114 |
Q |
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||||||||||||| ||||| |||||| | ||||| ||||||||||||||||||| || | ||||||||||||| ||| || || |||||||| | | | |
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| T |
1213521 |
ataggaagctgaaaagagtctcaacatagatttttgctgcttccacaaaaacaactctgttgctttgtttgtccattaagatctttaggggaattgttgt |
1213422 |
T |
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| Q |
115 |
tgacttttgttg |
126 |
Q |
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|||||||||||| |
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| T |
1213421 |
tgacttttgttg |
1213410 |
T |
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