View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_116 (Length: 214)
Name: NF16735_low_116
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_116 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 42125869 - 42125670
Alignment:
| Q |
1 |
catggttcttccaaaaacctgcttcaatccaaagcttttcatttgtttgcatatgtggtgcctttcattggattccattcactattactgcatatgctac |
100 |
Q |
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| T |
42125869 |
catggttcttccaaaaacctgcttcaatccaaagcttttcatttgtttgcatatgtggtgcctttcattggattccattcactattactgcatatgctac |
42125770 |
T |
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| Q |
101 |
catgttttctgaagttcaatcaaatcccattgcctttgccatttcatttacatgtgcttacttgcttcatggtctcatactcacctctctcacaggttct |
200 |
Q |
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| T |
42125769 |
catgttttctgaagttcaatcaaatcccattgcctttgccatttcatttacatgtgcttacttgcttcatggtctcatactcacctctctcacatgttct |
42125670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 35 - 193
Target Start/End: Complemental strand, 24929134 - 24928976
Alignment:
| Q |
35 |
cttttcatttgtttgcatatgtggtgcctttcattggattccattcactattactgcatatgctaccatgttttctgaagttcaatcaaatcccattgcc |
134 |
Q |
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||||||||||||||||||||||||||| ||||| ||||| ||||| || | | ||||||||||||||||||||||||||| | |||||| ||||| || |
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| T |
24929134 |
cttttcatttgtttgcatatgtggtgcttttcactggatcccatttaccgtcattgcatatgctaccatgttttctgaagtcccatcaaaccccatcacc |
24929035 |
T |
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| Q |
135 |
tttgccatttcatttacatgtgcttacttgcttcatggtctcatactcacctctctcac |
193 |
Q |
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||||||||| ||||||| || ||||||||||| ||||| ||||||| | ||||||| |
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| T |
24929034 |
tttgccattacatttaccatcgcctacttgcttcacggtctaatactcatcgctctcac |
24928976 |
T |
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