View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_118 (Length: 212)
Name: NF16735_low_118
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_118 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 5129891 - 5130065
Alignment:
| Q |
18 |
tactaagcaggagtcagaataccaatcaatgagaaaacacacatacagtactattcttaagaagtgggctcttcgttgaattcttcagtcttctccatca |
117 |
Q |
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| T |
5129891 |
tactaagcaggagtcagaataccaatcaatgagaaaatacacatacaatactattcttaagaagtgggctcttcgttgaattcttcagtcttctccatca |
5129990 |
T |
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| Q |
118 |
gattcggaggaagatatatttattatgtcaggataagatgatgaagaatgtgtactttccacaatctgttgggac |
192 |
Q |
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| T |
5129991 |
gattcggaggaagatatatttattatgtcaggataagatgatgaagaatgtgtactttccacaatctgttgggac |
5130065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 26324453 - 26324397
Alignment:
| Q |
106 |
tcttctccatcagattcggaggaagatatatttattatgtcaggataagatgatgaa |
162 |
Q |
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| T |
26324453 |
tcttcaccatcagataaggaggaagatatatttatcaagtcaccataagatgatgaa |
26324397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 8528038 - 8528094
Alignment:
| Q |
106 |
tcttctccatcagattcggaggaagatatatttattatgtcaggataagatgatgaa |
162 |
Q |
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| T |
8528038 |
tcttcaccatcagataaggaggaagatatatttatcaagtcactataagatgatgaa |
8528094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 9442205 - 9442261
Alignment:
| Q |
106 |
tcttctccatcagattcggaggaagatatatttattatgtcaggataagatgatgaa |
162 |
Q |
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| T |
9442205 |
tcttcaccatcagataaggaggaagatatatttatcaagtcactataagatgatgaa |
9442261 |
T |
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