View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16735_low_119 (Length: 210)

Name: NF16735_low_119
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16735_low_119
NF16735_low_119
[»] chr1 (3 HSPs)
chr1 (28-197)||(27257933-27258111)
chr1 (33-89)||(52182311-52182367)
chr1 (28-81)||(5494823-5494876)
[»] chr2 (3 HSPs)
chr2 (28-92)||(2308790-2308854)
chr2 (38-84)||(3858508-3858554)
chr2 (28-81)||(214985-215038)
[»] chr6 (1 HSPs)
chr6 (28-75)||(3000218-3000265)
[»] chr8 (1 HSPs)
chr8 (28-81)||(6388201-6388254)
[»] chr7 (2 HSPs)
chr7 (28-93)||(26201865-26201930)
chr7 (28-81)||(42610589-42610642)
[»] chr5 (2 HSPs)
chr5 (28-75)||(15672757-15672804)
chr5 (28-92)||(16548921-16548985)
[»] chr4 (2 HSPs)
chr4 (29-84)||(871779-871834)
chr4 (28-92)||(55165486-55165550)
[»] chr3 (1 HSPs)
chr3 (34-92)||(45602499-45602557)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 27257933 - 27258111
Alignment:
Q  28 ttttggtacctaaaaacgtaaattcattaaactcggcgagttaacactaaatttatgaaacattgttataagttatcgaccatca-------attataaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||   |||||       ||||||||    
T  27257933 ttttggtacctaaaaacgtaaattcattaaactcggcgagttaacactagatttataaaacattgttataagttatcagtcatcagccattaattataaa 27258032  T
Q  121 ctatgcacgcttatgagttatccactatttttacca--aagtctaaaacccaatttaaaacggtcacgtctttatctct 197  Q
    |||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||    
T  27258033 ctatgcacgcttatgagttatccactatttttacaaagaagtctaaaacccaatttaaaacggtcacgtctttatctct 27258111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 52182367 - 52182311
Alignment:
Q  33 gtacctaaaaacgtaaattcattaaactcggcgagttaacactaaatttatgaaaca 89  Q
    ||||||||||||||||| ||  |||||||||||||||||||||  |||| |||||||    
T  52182367 gtacctaaaaacgtaaactcgataaactcggcgagttaacactcgatttgtgaaaca 52182311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 5494823 - 5494876
Alignment:
Q  28 ttttggtacctaaaaacgtaaattcattaaactcggcgagttaacactaaattt 81  Q
    |||||||||||||||||||||| ||  ||| ||||| ||||||||||| |||||    
T  5494823 ttttggtacctaaaaacgtaaactcggtaatctcggagagttaacactcaattt 5494876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 2308790 - 2308854
Alignment:
Q  28 ttttggtacctaaaaacgtaaattcattaaactcggcgagttaacactaaatttatgaaacattg 92  Q
    ||||||||| |||||||||||||| | |||||||||||||||||||||  |||||||||||||||    
T  2308790 ttttggtacataaaaacgtaaatttaataaactcggcgagttaacactcgatttatgaaacattg 2308854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 3858508 - 3858554
Alignment:
Q  38 taaaaacgtaaattcattaaactcggcgagttaacactaaatttatg 84  Q
    |||||||||||||||  | ||||||||||||||||||| ||||||||    
T  3858508 taaaaacgtaaattcggttaactcggcgagttaacactcaatttatg 3858554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 214985 - 215038
Alignment:
Q  28 ttttggtacctaaaaacgtaaattcattaaactcggcgagttaacactaaattt 81  Q
    |||||||||||||||||||||||||  ||| |||||  |||||||||| |||||    
T  214985 ttttggtacctaaaaacgtaaattcggtaatctcggaaagttaacactcaattt 215038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 3000265 - 3000218
Alignment:
Q  28 ttttggtacctaaaaacgtaaattcattaaactcggcgagttaacact 75  Q
    |||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  3000265 ttttggtacctaaacacgtaaaatcagtaaactcggcgagttaacact 3000218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 6388201 - 6388254
Alignment:
Q  28 ttttggtacctaaaaacgtaaattcattaaactcggcgagttaacactaaattt 81  Q
    ||||||||||||||||| |||||||  |||||||||||||||| |||| |||||    
T  6388201 ttttggtacctaaaaacataaattcgataaactcggcgagttaccactcaattt 6388254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 26201865 - 26201930
Alignment:
Q  28 ttttggtacctaaaaacgtaaattcattaaactcggcgagttaacactaaatttatgaaacattgt 93  Q
    |||||||||||||||| ||||||||  |||||||||| ||||||||||  |||| || ||||||||    
T  26201865 ttttggtacctaaaaatgtaaattcggtaaactcggcaagttaacactcgatttgtggaacattgt 26201930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 42610642 - 42610589
Alignment:
Q  28 ttttggtacctaaaaacgtaaattcattaaactcggcgagttaacactaaattt 81  Q
    |||||||||||||| ||||||||||  ||||||| | ||||||||||| |||||    
T  42610642 ttttggtacctaaacacgtaaattcggtaaactcagagagttaacactcaattt 42610589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 15672757 - 15672804
Alignment:
Q  28 ttttggtacctaaaaacgtaaattcattaaactcggcgagttaacact 75  Q
    |||| |||||||||||| |||| ||| |||||||||||||||||||||    
T  15672757 ttttagtacctaaaaacataaactcagtaaactcggcgagttaacact 15672804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 16548921 - 16548985
Alignment:
Q  28 ttttggtacctaaaaacgtaaattcattaaactcggcgagttaacactaaatttatgaaacattg 92  Q
    |||||||||||||||||||||| ||  |||||||   |||||||||||  ||||||| |||||||    
T  16548921 ttttggtacctaaaaacgtaaactcgataaactcaatgagttaacactcgatttatggaacattg 16548985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 871834 - 871779
Alignment:
Q  29 tttggtacctaaaaacgtaaattcattaaactcggcgagttaacactaaatttatg 84  Q
    ||||||||||||||||||||| ||  |||||||| ||||||||||||  |||||||    
T  871834 tttggtacctaaaaacgtaaactcggtaaactcgacgagttaacactcgatttatg 871779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 55165550 - 55165486
Alignment:
Q  28 ttttggtacctaaaaacgtaaattcattaaactcggcgagttaacactaaatttatgaaacattg 92  Q
    ||||||||| |||||||||||| ||| |||||||| ||||||| ||||  |||| || |||||||    
T  55165550 ttttggtacgtaaaaacgtaaactcagtaaactcgacgagttagcactcgatttgtggaacattg 55165486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 45602499 - 45602557
Alignment:
Q  34 tacctaaaaacgtaaattcattaaactcggcgagttaacactaaatttatgaaacattg 92  Q
    |||| ||||||||||||||  |||||||||||||||||||||  |||  ||||||||||    
T  45602499 tacccaaaaacgtaaattcggtaaactcggcgagttaacactcgattcgtgaaacattg 45602557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University