View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16735_low_12 (Length: 560)

Name: NF16735_low_12
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16735_low_12
NF16735_low_12
[»] chr2 (21 HSPs)
chr2 (18-555)||(43131560-43132095)
chr2 (242-334)||(4978776-4978868)
chr2 (242-334)||(4996684-4996776)
chr2 (232-340)||(27896454-27896562)
chr2 (233-336)||(1870509-1870611)
chr2 (251-334)||(7304352-7304434)
chr2 (238-322)||(44065744-44065828)
chr2 (233-333)||(13738410-13738510)
chr2 (233-333)||(13835835-13835934)
chr2 (268-335)||(6315883-6315950)
chr2 (233-332)||(34501609-34501707)
chr2 (221-283)||(36766699-36766764)
chr2 (248-310)||(38193709-38193772)
chr2 (308-340)||(33635181-33635213)
chr2 (242-337)||(5525309-5525404)
chr2 (233-335)||(23453340-23453443)
chr2 (268-337)||(41436319-41436388)
chr2 (233-305)||(4623745-4623817)
chr2 (276-336)||(21646535-21646594)
chr2 (268-332)||(28331304-28331368)
chr2 (237-289)||(33635555-33635607)
[»] scaffold0299 (1 HSPs)
scaffold0299 (233-336)||(18031-18135)
[»] chr5 (25 HSPs)
chr5 (233-337)||(6102823-6102926)
chr5 (251-333)||(28511182-28511265)
chr5 (233-333)||(16802026-16802125)
chr5 (238-337)||(30840618-30840716)
chr5 (233-322)||(12036323-12036411)
chr5 (268-336)||(7609590-7609657)
chr5 (270-336)||(1447606-1447672)
chr5 (233-333)||(15139185-15139281)
chr5 (233-334)||(3600108-3600208)
chr5 (265-310)||(14044727-14044772)
chr5 (233-333)||(14152487-14152587)
chr5 (268-333)||(22293982-22294047)
chr5 (266-334)||(14863334-14863401)
chr5 (245-336)||(39034478-39034569)
chr5 (248-299)||(2835650-2835701)
chr5 (279-337)||(6830262-6830320)
chr5 (236-335)||(7224035-7224133)
chr5 (266-336)||(2611197-2611266)
chr5 (266-364)||(11320094-11320190)
chr5 (266-339)||(8435049-8435122)
chr5 (233-318)||(11815924-11816009)
chr5 (266-334)||(21052676-21052743)
chr5 (268-336)||(27544584-27544652)
chr5 (233-289)||(30293838-30293894)
chr5 (238-290)||(35290678-35290730)
[»] chr4 (30 HSPs)
chr4 (233-336)||(34236175-34236278)
chr4 (258-336)||(48202480-48202558)
chr4 (233-337)||(16831116-16831219)
chr4 (237-333)||(55090779-55090874)
chr4 (233-335)||(53142777-53142879)
chr4 (233-334)||(20775069-20775170)
chr4 (248-333)||(44740877-44740963)
chr4 (233-334)||(51100041-51100143)
chr4 (265-336)||(27284067-27284138)
chr4 (265-317)||(2565458-2565510)
chr4 (233-333)||(50101295-50101395)
chr4 (265-336)||(2824863-2824934)
chr4 (233-336)||(2908226-2908328)
chr4 (265-328)||(12094961-12095024)
chr4 (265-336)||(52837314-52837385)
chr4 (233-318)||(5645662-5645747)
chr4 (233-330)||(9119242-9119339)
chr4 (265-318)||(19480550-19480603)
chr4 (234-303)||(32325053-32325121)
chr4 (231-336)||(41142307-41142412)
chr4 (238-322)||(19248898-19248981)
chr4 (266-338)||(31647715-31647786)
chr4 (233-312)||(4860137-4860215)
chr4 (295-334)||(18744893-18744932)
chr4 (280-334)||(35808568-35808621)
chr4 (237-306)||(14347141-14347209)
chr4 (268-333)||(30694284-30694349)
chr4 (233-290)||(45921354-45921411)
chr4 (233-333)||(12076443-12076543)
chr4 (281-333)||(48524493-48524545)
[»] chr1 (25 HSPs)
chr1 (233-317)||(27513-27596)
chr1 (242-336)||(33148155-33148249)
chr1 (224-318)||(39238844-39238938)
chr1 (233-334)||(34382648-34382748)
chr1 (233-313)||(35876767-35876847)
chr1 (242-334)||(49731186-49731278)
chr1 (221-287)||(35873495-35873561)
chr1 (233-318)||(11449073-11449158)
chr1 (265-333)||(13969146-13969214)
chr1 (268-338)||(31884510-31884579)
chr1 (201-328)||(33148902-33149027)
chr1 (266-336)||(38597475-38597545)
chr1 (233-306)||(31160752-31160824)
chr1 (265-333)||(26890115-26890183)
chr1 (238-306)||(28490669-28490736)
chr1 (266-338)||(40391266-40391337)
chr1 (265-329)||(46295918-46295982)
chr1 (303-370)||(17644838-17644905)
chr1 (276-335)||(36160564-36160623)
chr1 (303-336)||(5069698-5069731)
chr1 (267-336)||(27742549-27742617)
chr1 (301-338)||(48887787-48887824)
chr1 (268-321)||(50127398-50127451)
chr1 (295-335)||(30109222-30109262)
chr1 (265-333)||(33337426-33337494)
[»] chr8 (24 HSPs)
chr8 (233-335)||(18131188-18131289)
chr8 (260-337)||(30924208-30924284)
chr8 (233-334)||(3137397-3137498)
chr8 (233-333)||(32881111-32881211)
chr8 (233-336)||(33621367-33621464)
chr8 (233-336)||(10451893-10451997)
chr8 (233-306)||(40607324-40607396)
chr8 (233-337)||(34678222-34678325)
chr8 (265-333)||(43917585-43917653)
chr8 (270-334)||(44655286-44655350)
chr8 (233-312)||(4989715-4989793)
chr8 (396-463)||(18117406-18117473)
chr8 (265-334)||(10029159-10029228)
chr8 (233-329)||(18200696-18200792)
chr8 (233-333)||(35901431-35901531)
chr8 (233-336)||(11150918-11151020)
chr8 (268-318)||(6270199-6270249)
chr8 (243-313)||(20821908-20821978)
chr8 (242-339)||(37529978-37530078)
chr8 (285-334)||(27162832-27162881)
chr8 (276-336)||(900292-900351)
chr8 (242-333)||(17921710-17921802)
chr8 (265-336)||(20542382-20542453)
chr8 (266-334)||(28462592-28462658)
[»] chr6 (22 HSPs)
chr6 (265-334)||(10008190-10008259)
chr6 (265-334)||(27082308-27082377)
chr6 (242-334)||(2911491-2911583)
chr6 (233-365)||(5611144-5611276)
chr6 (233-334)||(9213059-9213160)
chr6 (233-336)||(6770828-6770932)
chr6 (265-333)||(18493241-18493309)
chr6 (233-336)||(32800199-32800303)
chr6 (233-312)||(2613367-2613448)
chr6 (233-306)||(28048756-28048828)
chr6 (276-336)||(31223190-31223251)
chr6 (269-329)||(12677822-12677882)
chr6 (265-337)||(17835023-17835095)
chr6 (269-329)||(19659665-19659725)
chr6 (293-337)||(30396454-30396498)
chr6 (302-337)||(20208193-20208228)
chr6 (302-337)||(22102216-22102251)
chr6 (233-319)||(20208028-20208113)
chr6 (233-319)||(22102051-22102136)
chr6 (233-289)||(2398050-2398106)
chr6 (266-318)||(22552241-22552292)
chr6 (269-333)||(30699823-30699887)
[»] chr7 (28 HSPs)
chr7 (224-336)||(47445362-47445474)
chr7 (233-334)||(8656291-8656393)
chr7 (242-336)||(16979937-16980031)
chr7 (268-334)||(37928297-37928363)
chr7 (233-337)||(39786467-39786571)
chr7 (237-334)||(47537423-47537519)
chr7 (268-335)||(23142702-23142770)
chr7 (233-336)||(24937827-24937929)
chr7 (244-334)||(41760365-41760455)
chr7 (251-330)||(34834696-34834773)
chr7 (233-318)||(8896613-8896698)
chr7 (268-336)||(7833794-7833862)
chr7 (242-334)||(22931882-22931974)
chr7 (221-333)||(33194720-33194832)
chr7 (242-314)||(34993152-34993224)
chr7 (266-318)||(45907082-45907134)
chr7 (237-336)||(12810166-12810265)
chr7 (238-331)||(37532574-37532668)
chr7 (233-319)||(39386917-39387003)
chr7 (269-333)||(16685729-16685794)
chr7 (269-333)||(17659965-17660030)
chr7 (265-314)||(23317845-23317894)
chr7 (233-286)||(25780245-25780298)
chr7 (269-330)||(26241656-26241717)
chr7 (265-318)||(33988492-33988545)
chr7 (242-326)||(46300678-46300762)
chr7 (233-293)||(21164669-21164729)
chr7 (287-335)||(42061222-42061270)
[»] scaffold0039 (1 HSPs)
scaffold0039 (265-337)||(30034-30106)
[»] chr3 (27 HSPs)
chr3 (249-333)||(4490779-4490862)
chr3 (242-318)||(29032425-29032501)
chr3 (268-336)||(48338808-48338876)
chr3 (233-333)||(34228273-34228372)
chr3 (269-331)||(37043037-37043099)
chr3 (233-334)||(45408684-45408784)
chr3 (233-331)||(55446733-55446830)
chr3 (233-331)||(2127368-2127461)
chr3 (244-333)||(2379631-2379719)
chr3 (268-333)||(4020096-4020161)
chr3 (266-335)||(15671165-15671233)
chr3 (233-337)||(42788343-42788448)
chr3 (234-319)||(54801346-54801431)
chr3 (233-305)||(41287898-41287969)
chr3 (266-321)||(35322019-35322074)
chr3 (270-328)||(31069612-31069670)
chr3 (268-330)||(31494055-31494117)
chr3 (266-336)||(42163655-42163724)
chr3 (266-336)||(44291278-44291347)
chr3 (265-333)||(6785841-6785910)
chr3 (268-332)||(26613115-26613180)
chr3 (254-334)||(40491240-40491320)
chr3 (268-336)||(4128743-4128811)
chr3 (234-290)||(25958075-25958131)
chr3 (265-333)||(28709613-28709681)
chr3 (269-333)||(40843060-40843124)
chr3 (268-320)||(50958871-50958923)
[»] scaffold0034 (1 HSPs)
scaffold0034 (266-338)||(22472-22543)
[»] scaffold0017 (1 HSPs)
scaffold0017 (295-333)||(31466-31504)


Alignment Details
Target: chr2 (Bit Score: 482; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 18 - 555
Target Start/End: Original strand, 43131560 - 43132095
Alignment:
Q  18 aagaacataatgaataacatgaatgagttaaacatggagaaaattggcacagctgctttattcggacttgagtgttatctttggtattgtgggggtgaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43131560 aagaacataatgaataacatgaatgagttaaacatggagaaaattggcacagctgctttattcggacttgagtgttatctttggtattgtgggggtgaga 43131659  T
Q  118 tagttggcagaggatttacattcactggctactatgtttaagtggagtggaactatccaataagacattactgctgctagtttaagggtcttgctactag 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43131660 tagttggcagaggatttacatttactggctactatgtttaagtggagtggaactatccaataagacattactgctgctagtttaagggtcttgctactag 43131759  T
Q  218 ttaaaagaatccttgaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttt 317  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43131760 tt-aaagaatccttgaataaaaattttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttt 43131858  T
Q  318 tggttgtttaaccaatgcctcaacgatattggctaatattctccttaatttaaccgttgaaaataagaatatttagaatcacaacgtatttgatccacct 417  Q
    ||||||||||| |||||||||||||| ||||| |||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  43131859 tggttgtttaatcaatgcctcaacgacattggttaatattctccttagtttaactgttgaaaattagaatatttagaatcacaacgtatttgatccacct 43131958  T
Q  418 caatttcatgtcttgaaatgacaattcaattcgatatggtgagcataattataattatgtctaacatttgtgaaggttcatattgctttaaggccaggcc 517  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43131959 caatttcatgtcttgaaatgacaa-tcaattcgatatgatgagcataattataattatgtctaacatttgtgaaggttcatattgctttaaggctaggcc 43132057  T
Q  518 attttattttaaatcatgaattatttccctttgcttct 555  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43132058 attttattttaaatcatgaattatttccctttgcttct 43132095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 242 - 334
Target Start/End: Original strand, 4978776 - 4978868
Alignment:
Q  242 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 334  Q
    |||||||| ||||| |||| |  |||||||||||||||||| ||||||| || |||||||||||||||| || |||||| |||||||||||||    
T  4978776 tttgtcttgaaaatataagatgttacttttgatcaagtaatgattacacaacatttttataaaaacttatttattttggatgtttaaccaatg 4978868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 242 - 334
Target Start/End: Original strand, 4996684 - 4996776
Alignment:
Q  242 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 334  Q
    |||||||| ||||| |||| |  |||||||||||||||||| ||||||| || |||||||||||||||| || |||||| |||||||||||||    
T  4996684 tttgtcttgaaaatataagatgttacttttgatcaagtaatgattacacaacatttttataaaaacttatttattttggatgtttaaccaatg 4996776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 232 - 340
Target Start/End: Complemental strand, 27896562 - 27896454
Alignment:
Q  232 gaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaacca 331  Q
    ||||| ||||||||| ||| |||| |||| |  ||||||||||  |||||||||||||| || |||| || ||||||||||| |||||||||||||||||    
T  27896562 gaatagaaaatttgttttagaaatataagctgttacttttgatttagtaataattacacaactttttaattaaaacttacttattttggttgtttaacca 27896463  T
Q  332 atgcctcaa 340  Q
     ||||||||    
T  27896462 ctgcctcaa 27896454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 233 - 336
Target Start/End: Original strand, 1870509 - 1870611
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||| |||||||||||| ||||| |||| ||  ||||||||| ||||||||||||||| |  |||||||||||| ||||||||||| |||| ||||||||    
T  1870509 aatagaaaatttgtcttgaaaatataagctttgacttttgattaagtaataattacac-atttttttataaaaagttacttgtttttgttgcttaaccaa 1870607  T
Q  333 tgcc 336  Q
    ||||    
T  1870608 tgcc 1870611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 251 - 334
Target Start/End: Original strand, 7304352 - 7304434
Alignment:
Q  251 aaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 334  Q
    ||||||||||||| || |||| || |||||||||||||||||| ||||||||||| |||| ||||||| |||||||||||||||    
T  7304352 aaaatgtaagtttttatttttaatgaagtaataattacactacgtttttataaaatcttatttgtttt-gttgtttaaccaatg 7304434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 322
Target Start/End: Original strand, 44065744 - 44065828
Alignment:
Q  238 aaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggtt 322  Q
    |||||||| ||| ||||||||||||| ||||||| || |||||||||| ||||||| ||||| || ||| |||||||||||||||    
T  44065744 aaaatttgccttgaaaatgtaagtttttacttttaatgaagtaataatcacactacttttttgtacaaagttacttgttttggtt 44065828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 13738410 - 13738510
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||||||| ||||| || ||||| |||| |  ||||| |||| ||||||| ||||||| |  |||||||||||||||||||||||||| || ||||||||    
T  13738410 aataaaaattttgttttgaaaatataagatgttacttctgataaagtaatgattacacaatttttttataaaaacttacttgttttggatgcttaaccaa 13738509  T
Q  333 t 333  Q
    |    
T  13738510 t 13738510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 333
Target Start/End: Complemental strand, 13835934 - 13835835
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||| ||||| |||||| ||||| |||||||  |||||| || |||||||||||||||||  |||||||||||| ||| || ||||| ||| ||||||||    
T  13835934 aatagaaaatctgtcttgaaaatataagttttgactttttattaagtaataattacacta-ttttttataaaaaattatttattttgcttgcttaaccaa 13835836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 335
Target Start/End: Complemental strand, 6315950 - 6315883
Alignment:
Q  268 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgc 335  Q
    ||||||||||||||| ||||||| |  |||||| ||||| ||| ||||||||| ||||||||||||||    
T  6315950 ttttgatcaagtaatgattacacaatttttttacaaaaatttatttgttttggatgtttaaccaatgc 6315883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 332
Target Start/End: Original strand, 34501609 - 34501707
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    ||||||||| ||||||||||||| ||| |||  | |||| || ||||||||||||||| |  |||||||||||| ||| ||| |||||||| ||||||||    
T  34501609 aataaaaaagttgtcttaaaaatataatttttgattttttattaagtaataattacac-aattttttataaaaagttatttgatttggttgcttaaccaa 34501707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 36766699 - 36766764
Alignment:
Q  221 aaagaatccttgaataaaaaatttgtcttaaaaatgt---aagtttatacttttgatcaagtaata 283  Q
    ||||||||| ||||||||||||||||||| |||||||   |||||  |||||||||||||||||||    
T  36766699 aaagaatccatgaataaaaaatttgtcttgaaaatgtaacaagttgttacttttgatcaagtaata 36766764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 38193709 - 38193772
Alignment:
Q  248 ttaaaaatgtaagtttatacttttgatcaagtaataattacactaccttttt-ataaaaactta 310  Q
    |||||||||||||||| || ||||||| || ||||||||||||||| ||||| |||||||||||    
T  38193709 ttaaaaatgtaagtttttatttttgatgaaataataattacactacttttttcataaaaactta 38193772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 340
Target Start/End: Complemental strand, 33635213 - 33635181
Alignment:
Q  308 ttacttgttttggttgtttaaccaatgcctcaa 340  Q
    |||||||||||||||||||||||||||||||||    
T  33635213 ttacttgttttggttgtttaaccaatgcctcaa 33635181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 337
Target Start/End: Original strand, 5525309 - 5525404
Alignment:
Q  242 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcct 337  Q
    |||||||| |||| ||||| |  ||| ||||| ||| |||| |||| ||||| ||||  ||||||||||||| |||| |||| |||||||||||||    
T  5525309 tttgtcttgaaaacgtaagatgttacatttgaccaaataatgattatactactttttattaaaaacttacttattttagttgcttaaccaatgcct 5525404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 335
Target Start/End: Complemental strand, 23453443 - 23453340
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttt-tataaaaacttacttgttttggttgtttaacca 331  Q
    |||||||| |||||||| ||||| |||| |  ||||||||||||| |||  ||||||| || ||||  |||||||||| |||||||||| |  |||||||    
T  23453443 aataaaaattttgtcttgaaaatataagatgttacttttgatcaaataaagattacacaactttttccataaaaacttgcttgttttggatacttaacca 23453344  T
Q  332 atgc 335  Q
    ||||    
T  23453343 atgc 23453340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 337
Target Start/End: Complemental strand, 41436388 - 41436319
Alignment:
Q  268 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcct 337  Q
    ||||||| || |||| ||||||| || |||| || |||||||||||||||||| || ||||||| |||||    
T  41436388 ttttgataaaataatgattacacaactttttcatgaaaacttacttgttttggatgcttaaccattgcct 41436319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 4623745 - 4623817
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaa 305  Q
    |||||||||||||| |||||| | ||||||  ||||||| | ||| |||||||||||| |  |||||||||||    
T  4623745 aataaaaaatttgtgttaaaattataagttgttacttttaaccaactaataattacaccaattttttataaaa 4623817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 336
Target Start/End: Original strand, 21646535 - 21646594
Alignment:
Q  276 aagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    |||||||||||||| ||| |||| || |||||||||||  ||||| |||||||||||||||    
T  21646535 aagtaataattacattactttttaatgaaaacttacttcatttgg-tgtttaaccaatgcc 21646594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 28331304 - 28331368
Alignment:
Q  268 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    ||||||||||||||| ||||||| ||  ||| |||||||||||||| |||||  || ||||||||    
T  28331304 ttttgatcaagtaatgattacacaactctttcataaaaacttacttattttgaatgcttaaccaa 28331368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 33635607 - 33635555
Alignment:
Q  237 aaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattaca 289  Q
    ||||||||||||| ||||| ||| |||  ||||||||| ||||||||||||||    
T  33635607 aaaaatttgtcttgaaaatataaattttgacttttgattaagtaataattaca 33635555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 233 - 336
Target Start/End: Original strand, 18031 - 18135
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactac-ctttttataaaaacttacttgttttggttgtttaacca 331  Q
    |||| ||||||| |||||||||| |||||||  ||||||||| ||||||||||||||| ||  |||||||||||| |||||||||||||||| |||||||    
T  18031 aatagaaaatttatcttaaaaatataagttttgacttttgattaagtaataattacacaactttttttataaaaagttacttgttttggttgcttaacca 18130  T
Q  332 atgcc 336  Q
    |||||    
T  18131 atgcc 18135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 233 - 337
Target Start/End: Complemental strand, 6102926 - 6102823
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||| |||||||||||| ||||| |||||||  ||||||||| |||||||||||||| || ||||| ||||||| |||||| ||||||||| ||||||||    
T  6102926 aatagaaaatttgtcttcaaaatataagttttgacttttgattaagtaataattacaata-cttttaataaaaagttacttattttggttgcttaaccaa 6102828  T
Q  333 tgcct 337  Q
    |||||    
T  6102827 tgcct 6102823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 333
Target Start/End: Original strand, 28511182 - 28511265
Alignment:
Q  251 aaaatgtaagtttatacttttgatcaagtaataattacactac-ctttttataaaaacttacttgttttggttgtttaaccaat 333  Q
    ||||||||||||| |||||||||| || |||||||||||||||  ||||||||||||||||| ||||||||||| |||||||||    
T  28511182 aaaatgtaagtttttacttttgatgaattaataattacactactttttttataaaaacttacatgttttggttgcttaaccaat 28511265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 233 - 333
Target Start/End: Complemental strand, 16802125 - 16802026
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||| |||||||||||| ||||| ||| |||  ||||||||| |||||||||||||| || ||||||||||||| ||| |||||||||||| ||||||||    
T  16802125 aatagaaaatttgtcttgaaaatataaattttgacttttgattaagtaataattacatta-ctttttataaaaagttatttgttttggttgcttaaccaa 16802027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 238 - 337
Target Start/End: Original strand, 30840618 - 30840716
Alignment:
Q  238 aaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcct 337  Q
    |||||||||||| ||||| |||| |  |||||||||||||||||| ||||||| | |||||| | |||||||||||||||||| || |||| ||||||||    
T  30840618 aaaatttgtcttgaaaatataagatgttacttttgatcaagtaatgattacac-aactttttttgaaaacttacttgttttggatgcttaatcaatgcct 30840716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 322
Target Start/End: Original strand, 12036323 - 12036411
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggtt 322  Q
    |||| |||||||||||| ||||| |||||||  ||||||||| |||||||||||||| || ||||| ||||||| ||| || ||||||||    
T  12036323 aatagaaaatttgtcttgaaaatataagttttgacttttgattaagtaataattacatta-cttttaataaaaagttatttattttggtt 12036411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 336
Target Start/End: Original strand, 7609590 - 7609657
Alignment:
Q  268 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    |||| ||||||||||||||||| ||| |||| |||||||||||||| |||||| || ||||||||||||    
T  7609590 tttttatcaagtaataattacattactttttaataaaaacttacttcttttgg-tgcttaaccaatgcc 7609657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 336
Target Start/End: Original strand, 1447606 - 1447672
Alignment:
Q  270 ttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    |||| ||||||||||||||||||| |||   ||||||||||||| |||| |||| ||||||||||||    
T  1447606 ttgaccaagtaataattacactacttttcattaaaaacttacttatttttgttgcttaaccaatgcc 1447672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 15139185 - 15139281
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    ||||||||||||||||| ||||| |||| ||  | ||||||| |||||||   |||||||| |||||||||||| |||||| ||||| ||| ||||||||    
T  15139185 aataaaaaatttgtcttgaaaatataagatttgatttttgattaagtaat---tacactac-tttttataaaaaattacttattttgattgcttaaccaa 15139280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 334
Target Start/End: Complemental strand, 3600208 - 3600108
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    ||||||| ||||||||| ||||| |||||||  | |||| || |||||||||||||| || ||||||||||||| ||  || ||||||||| |||| |||    
T  3600208 aataaaatatttgtcttgaaaatataagttttgaattttaattaagtaataattacatta-ctttttataaaaagttttttattttggttgcttaatcaa 3600110  T
Q  333 tg 334  Q
    ||    
T  3600109 tg 3600108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 14044727 - 14044772
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaactta 310  Q
    |||||||||||||||||| ||||||| || ||||||||||||||||    
T  14044727 tacttttgatcaagtaattattacacaacttttttataaaaactta 14044772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 14152487 - 14152587
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttat-aaaaacttacttgttttggttgtttaacca 331  Q
    |||| ||||||| |||||||| |  ||||||| | |||| || ||||||||||||||| | |||||||| ||||| |||||||||||||||  |||||||    
T  14152487 aatagaaaatttatcttaaaattaaaagtttagattttttatgaagtaataattacacca-ctttttataaaaaagttacttgttttggttacttaacca 14152585  T
Q  332 at 333  Q
    ||    
T  14152586 at 14152587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 22294047 - 22293982
Alignment:
Q  268 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 333  Q
    |||||||||| |||| ||| ||| || |||| ||||||||||||||||||||  ||||||||||||    
T  22294047 ttttgatcaaataattattgcacaactttttcataaaaacttacttgttttgaatgtttaaccaat 22293982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 334
Target Start/End: Complemental strand, 14863401 - 14863334
Alignment:
Q  266 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 334  Q
    |||||| ||||||||||||||||| ||  |||| |||||||||||||| |||||| || ||||||||||    
T  14863401 actttttatcaagtaataattacattaatttttaataaaaacttactttttttgg-tgcttaaccaatg 14863334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 336
Target Start/End: Original strand, 39034478 - 39034569
Alignment:
Q  245 gtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttt-tataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    ||||| ||||| |||||||  ||||||||| |||||||||||||||||  |||| || ||||| ||| |||||||||||| | ||||||||||    
T  39034478 gtcttgaaaatataagttttgacttttgattaagtaataattacactatattttataaaaaaaatta-ttgttttggttgctaaaccaatgcc 39034569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 2835650 - 2835701
Alignment:
Q  248 ttaaaaatgtaagtttatacttttgatcaagtaataattacactaccttttt 299  Q
    |||||||||||| ||| |||||||||| |||||||| ||||| |||||||||    
T  2835650 ttaaaaatgtaaatttttacttttgataaagtaatatttacattaccttttt 2835701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 6830320 - 6830262
Alignment:
Q  279 taataattacactacctttttataaaaac-ttacttgttttggttgtttaaccaatgcct 337  Q
    ||||||||||||||| |||| |||||||  |||||||||||||||| |||||||||||||    
T  6830320 taataattacactac-ttttaataaaaaaattacttgttttggttgcttaaccaatgcct 6830262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 335
Target Start/End: Complemental strand, 7224133 - 7224035
Alignment:
Q  236 aaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgc 335  Q
    |||||| |||| || | ||||||||||| ||||||| || |||  |||||||||||| | |||||||||||||| | | ||||||||| ||||| |||||    
T  7224133 aaaaaaattgtgttgagaatgtaagtttttacttttaatgaagcgataattacactatc-ttttataaaaacttgcatattttggttgcttaactaatgc 7224035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 336
Target Start/End: Original strand, 2611197 - 2611266
Alignment:
Q  266 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    |||||| || |||||||||||||| ||| |||| ||||||||||||||  ||||| || ||||||||||||    
T  2611197 actttttattaagtaataattacattactttttaataaaaacttacttcatttgg-tgcttaaccaatgcc 2611266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 364
Target Start/End: Complemental strand, 11320190 - 11320094
Alignment:
Q  266 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcctcaacgatattggctaatattctcctta 364  Q
    |||||| ||||||||||||||||| ||| |||| ||||||| | |||| |||||| || |||||||||| ||||| || | ||| ||| ||||||||||    
T  11320190 actttttatcaagtaataattacattactttttaataaaaattaactt-ttttgg-tgcttaaccaatgtctcaatgacactggttaacattctcctta 11320094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 8435122 - 8435049
Alignment:
Q  266 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcctca 339  Q
    |||||||| ||| ||||||||| || |  |||| |||||| ||||||| |||||| || |||||||||||||||    
T  8435122 acttttgaccaactaataattataccattttttaataaaatcttacttattttggatgcttaaccaatgcctca 8435049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 318
Target Start/End: Complemental strand, 11816009 - 11815924
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 318  Q
    |||| ||| |||||||| ||||| |||| |  |||||||||| ||||||| |||||||    |||| |||||||||||||||||||    
T  11816009 aatagaaattttgtcttgaaaatataagatgttacttttgataaagtaatgattacacatatttttcataaaaacttacttgtttt 11815924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 21052676 - 21052743
Alignment:
Q  266 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 334  Q
    |||||| |||||||||||||||||  |  |||| |||||||||||||| |||||| || ||||||||||    
T  21052676 actttttatcaagtaataattacatgattttttaataaaaacttacttcttttgg-tgcttaaccaatg 21052743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 336
Target Start/End: Complemental strand, 27544652 - 27544584
Alignment:
Q  268 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    |||| |||| ||||| ||||||| || |||| || |||| ||||||||||||| |||||||| ||||||    
T  27544652 tttttatcatgtaatgattacacaactttttcatgaaaatttacttgttttggatgtttaactaatgcc 27544584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 30293838 - 30293894
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattaca 289  Q
    |||| ||| |||||||||||||| |||| |  |||||||||||||||||| ||||||    
T  30293838 aatagaaattttgtcttaaaaatataagatgttacttttgatcaagtaatgattaca 30293894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 35290730 - 35290678
Alignment:
Q  238 aaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 290  Q
    |||||||||||||||||| || ||||  ||||||||| |||||||| ||||||    
T  35290730 aaaatttgtcttaaaaatatatgttttgacttttgattaagtaatatttacac 35290678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 233 - 336
Target Start/End: Complemental strand, 34236278 - 34236175
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttt-tataaaaacttacttgttttggttgtttaacca 331  Q
    ||||||||||||||| | ||||| |||||||| ||||||||| |||| ||||||||||||  |||| || ||||| ||||||||||||||||||||||||    
T  34236278 aataaaaaatttgtcctgaaaatataagttta-acttttgattaagtgataattacactattttttataaaaaaaattacttgttttggttgtttaacca 34236180  T
Q  332 atgcc 336  Q
    |||||    
T  34236179 atgcc 34236175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 258 - 336
Target Start/End: Complemental strand, 48202558 - 48202480
Alignment:
Q  258 aagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    |||||| | |||||||| ||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||||    
T  48202558 aagtttttgcttttgatgaagtaataattacactaccttcttataaaaacttacctgttttgtttgcttaaccaatgcc 48202480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 233 - 337
Target Start/End: Original strand, 16831116 - 16831219
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||| ||||||||| |||||||| ||| |||  ||||||||| |||||||||||| |||| ||||||||||||| ||| |||||||||||| |||| |||    
T  16831116 aatataaaatttgttttaaaaatataaattttgacttttgattaagtaataattatacta-ctttttataaaaagttatttgttttggttgcttaatcaa 16831214  T
Q  333 tgcct 337  Q
    |||||    
T  16831215 tgcct 16831219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 237 - 333
Target Start/End: Complemental strand, 55090874 - 55090779
Alignment:
Q  237 aaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 333  Q
    ||||||||||||| ||||| |||||||  ||||||||| |||| |||||||||| | ||||||||||||| ||||||||||| |||| |||||||||    
T  55090874 aaaaatttgtcttgaaaatataagttttgacttttgattaagttataattacac-aactttttataaaaagttacttgttttagttgcttaaccaat 55090779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 335
Target Start/End: Complemental strand, 53142879 - 53142777
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    ||||||||||||||| | ||||| |||||||  ||||||||| ||||||||||||||  |  |||||||||||| ||| |||||| ||||| ||||||||    
T  53142879 aataaaaaatttgtcatgaaaatataagttttaacttttgattaagtaataattacatcatttttttataaaaagttatttgtttcggttgcttaaccaa 53142780  T
Q  333 tgc 335  Q
    |||    
T  53142779 tgc 53142777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 233 - 334
Target Start/End: Complemental strand, 20775170 - 20775069
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||||||||||||||||| |||| |||| |  || |||||||||| |||| ||||||  || |||| ||||||||||||||||||||| || ||||||||    
T  20775170 aataaaaaatttgtcttagaaatataagatattatttttgatcaaataattattacataactttttcataaaaacttacttgttttggatgcttaaccaa 20775071  T
Q  333 tg 334  Q
    ||    
T  20775070 tg 20775069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 333
Target Start/End: Original strand, 44740877 - 44740963
Alignment:
Q  248 ttaaaaatgtaagtttatacttttgatcaagtaat-aattacactacctttttataaaaacttacttgttttggttgtttaaccaat 333  Q
    |||||||||||||||| || ||||||| ||||||| ||||| | ||  |||||||||||| |||||| |||||||||||||||||||    
T  44740877 ttaaaaatgtaagtttttaattttgatgaagtaattaattaaattatttttttataaaaatttacttattttggttgtttaaccaat 44740963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 233 - 334
Target Start/End: Original strand, 51100041 - 51100143
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttat-aaaaacttacttgttttggttgtttaacca 331  Q
    |||| ||||||| | || ||||| |||||||  ||||||||| |||||||||||||||||| |||| || ||||| |||||||||||| ||||||||| |    
T  51100041 aatagaaaatttattttgaaaatataagttttaacttttgattaagtaataattacactactttttaataaaaaagttacttgttttgattgtttaacaa 51100140  T
Q  332 atg 334  Q
    |||    
T  51100141 atg 51100143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 27284138 - 27284067
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    ||||||||||||| |||| ||| ||| || |||||||||||||||| || |||||| |||||||||||||||    
T  27284138 tacttttgatcaaataatgattgcacaacttttttataaaaacttatttattttggatgtttaaccaatgcc 27284067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 2565458 - 2565510
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttt 317  Q
    |||||||||||||||||| ||||||| || ||| |||||||||||||||||||    
T  2565458 tacttttgatcaagtaatgattacacaacttttctataaaaacttacttgttt 2565510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 50101295 - 50101395
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    ||||||||||||||||||||||| |||||||  | ||||||| || || |||||| |  |  |||||||||||| ||| |||||||| |||||||| |||    
T  50101295 aataaaaaatttgtcttaaaaatataagttttgatttttgattaaatattaattatatcatttttttataaaaaattatttgttttgattgtttaatcaa 50101394  T
Q  333 t 333  Q
    |    
T  50101395 t 50101395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 2824863 - 2824934
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    |||||||||||||||||| ||||||| || |||| |||||||||| |||||||| | || |||| |||||||    
T  2824863 tacttttgatcaagtaatgattacacaacattttcataaaaacttgcttgttttagatgcttaatcaatgcc 2824934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 336
Target Start/End: Original strand, 2908226 - 2908328
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||| |||||||||||| ||||| ||| |||  | ||||||  ||||||||||||||| || ||| |||||||| | |||| ||||||||| ||||||||    
T  2908226 aatagaaaatttgtcttgaaaatataaattttgatttttgagtaagtaataattacaccac-tttctataaaaagtcacttattttggttgcttaaccaa 2908324  T
Q  333 tgcc 336  Q
    ||||    
T  2908325 tgcc 2908328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 12095024 - 12094961
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaa 328  Q
    |||||||||| ||||||| ||||||| || |||| |||||||||||||| |||||| |||||||    
T  12095024 tacttttgataaagtaatgattacacaactttttcataaaaacttacttattttggatgtttaa 12094961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 52837314 - 52837385
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    |||||||||||| ||||| ||||||| || |||| ||||||| || |||||||||| || ||||||||||||    
T  52837314 tacttttgatcacgtaattattacacaactttttcataaaaattttcttgttttggatgcttaaccaatgcc 52837385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 5645662 - 5645747
Alignment:
Q  233 aataaaaaatttgtctt-aaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 318  Q
    |||| |||||||||||| |||||  |||||||  ||||||||| || |||||||||||||| ||||||||||||| ||| |||||||    
T  5645662 aatagaaaatttgtcttgaaaaaattaagttttgacttttgattaaataataattacacta-ctttttataaaaagttatttgtttt 5645747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 330
Target Start/End: Complemental strand, 9119339 - 9119242
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttat-aaaaacttacttgttttggttgtttaacc 330  Q
    |||| |||||||||  | ||||| |||||||  ||||||||| |||||| |||||||||| ||||| || ||||| |||||||||||||||| ||||||    
T  9119339 aatagaaaatttgtggtgaaaatataagttttgacttttgattaagtaacaattacacta-cttttaataaaaaaattacttgttttggttgcttaacc 9119242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 265 - 318
Target Start/End: Complemental strand, 19480603 - 19480550
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 318  Q
    |||||||||| ||||||| ||||||| || |||| |||||||||||||||||||    
T  19480603 tacttttgataaagtaatgattacacaactttttcataaaaacttacttgtttt 19480550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 32325121 - 32325053
Alignment:
Q  234 ataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataa 303  Q
    |||||||||||||||| ||||| ||| |||  ||||||||| ||||||||||||||| | ||||||||||    
T  32325121 ataaaaaatttgtcttgaaaatataatttttgacttttgattaagtaataattacacca-ctttttataa 32325053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 336
Target Start/End: Original strand, 41142307 - 41142412
Alignment:
Q  231 tgaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaacc 330  Q
    |||||||||| |||||||| ||||  |||| |  |||||||||| || ||||||||||| ||| ||||| | |||| ||||||||||||  || ||||||    
T  41142307 tgaataaaaattttgtcttgaaaaaataaggtcttacttttgattaaataataattacattacttttttgtgaaaatttacttgttttgaatgcttaacc 41142406  T
Q  331 aatgcc 336  Q
    | ||||    
T  41142407 attgcc 41142412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 322
Target Start/End: Complemental strand, 19248981 - 19248898
Alignment:
Q  238 aaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggtt 322  Q
    |||||||||||||||||| |||||||  | |||| || ||||||| |||||| |  ||||||||||||| ||| |||||||||||    
T  19248981 aaaatttgtcttaaaaatataagttttgatttttaattaagtaatgattaca-tcactttttataaaaaattagttgttttggtt 19248898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 31647786 - 31647715
Alignment:
Q  266 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcctc 338  Q
    |||||| ||||||||||||||||| ||| |||| ||||||||||| || |||||| || ||||||||| ||||    
T  31647786 actttttatcaagtaataattacattactttttaataaaaacttatttcttttgg-tgcttaaccaatacctc 31647715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 4860215 - 4860137
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttact 312  Q
    |||| ||||||||| || ||||| |||||||  ||||||||| |||||||||||||| | | |||||||||||| |||||    
T  4860215 aatagaaaatttgttttgaaaatataagttttgacttttgattaagtaataattaca-tccttttttataaaaaattact 4860137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 334
Target Start/End: Complemental strand, 18744932 - 18744893
Alignment:
Q  295 tttttataaaaacttacttgttttggttgtttaaccaatg 334  Q
    ||||||||||||||| |||||||||| |||||||||||||    
T  18744932 tttttataaaaacttgcttgttttggatgtttaaccaatg 18744893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 35808568 - 35808621
Alignment:
Q  280 aataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 334  Q
    ||||||||||| || |||||||||||| |||||| ||||||||| ||||||||||    
T  35808568 aataattacacaac-tttttataaaaagttacttattttggttgcttaaccaatg 35808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 14347141 - 14347209
Alignment:
Q  237 aaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaa 306  Q
    |||||||| |||||||||| |||||||  | ||||||| |||||||||||| ||||  ||||||||||||    
T  14347141 aaaaatttatcttaaaaatataagttttgatttttgattaagtaataattatacta-ttttttataaaaa 14347209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 30694349 - 30694284
Alignment:
Q  268 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 333  Q
    |||||||||||||||||||| ||  |  |||| | |||||||||||||||||||||  ||||||||    
T  30694349 ttttgatcaagtaataattatacctctgttttgtgaaaacttacttgttttggttgcataaccaat 30694284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 45921354 - 45921411
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 290  Q
    |||| |||||||||||| ||||| |||||||  ||| ||||| |||||||||||||||    
T  45921354 aatagaaaatttgtcttgaaaatataagttttgactattgattaagtaataattacac 45921411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 12076443 - 12076543
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||||||| |||||||| ||||| |||| |  || ||||||||||| ||| || |||| |  |||| || | |||||||||||||| | |||||||||||    
T  12076443 aataaaaattttgtcttgaaaatataagatgttaattttgatcaagcaatgatcacacaattttttgatgagaacttacttgttttagatgtttaaccaa 12076542  T
Q  333 t 333  Q
    |    
T  12076543 t 12076543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 48524545 - 48524493
Alignment:
Q  281 ataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 333  Q
    |||||||||| |  |||||||||||| |||||||||||||||| |||| ||||    
T  48524545 ataattacacaatttttttataaaaagttacttgttttggttgcttaatcaat 48524493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 233 - 317
Target Start/End: Complemental strand, 27596 - 27513
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttt 317  Q
    ||||||||||||||||| ||||| |||||||  ||||||||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  27596 aataaaaaatttgtctttaaaatataagttttgacttttgattaagtaataattacacta-ctttttataaaaagttacttgttt 27513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 336
Target Start/End: Original strand, 33148155 - 33148249
Alignment:
Q  242 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    |||||||||||||| |||| |  |||||||||||||||||| ||||||| |  |||| ||||||||||||||||||||  |||||||| ||||||    
T  33148155 tttgtcttaaaaatataagatgctacttttgatcaagtaatgattacacaattttttcataaaaacttacttgttttgaatgtttaacaaatgcc 33148249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 318
Target Start/End: Complemental strand, 39238938 - 39238844
Alignment:
Q  224 gaatccttgaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 318  Q
    |||||| | |||||||| ||| |||||||||||||||||  ||| |||||||||||||| |||||||||  ||||  ||||||||||||||||||    
T  39238938 gaatccataaataaaaattttctcttaaaaatgtaagttgttacatttgatcaagtaatgattacactattttttattaaaaacttacttgtttt 39238844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 233 - 334
Target Start/End: Original strand, 34382648 - 34382748
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||||||||||| |||||||||| |||||||  | ||||||| ||  ||||||||||| || |||||||||||| |||||||||||| ||||| ||||||    
T  34382648 aataaaaaatttatcttaaaaatataagttttaatttttgattaaacaataattacacaac-tttttataaaaagttacttgttttgattgttaaaccaa 34382746  T
Q  333 tg 334  Q
    ||    
T  34382747 tg 34382748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 35876847 - 35876767
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttactt 313  Q
    ||||||||||||||||||||||| |||||||  ||||||||| ||| || ||| ||||||  |||||||||||| ||||||    
T  35876847 aataaaaaatttgtcttaaaaatataagttttaacttttgattaaggaacaataacactatttttttataaaaagttactt 35876767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 242 - 334
Target Start/End: Original strand, 49731186 - 49731278
Alignment:
Q  242 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 334  Q
    |||||||| || ||||||| |  ||| ||||| ||| ||||||||| ||||| ||||  |||||||||||||||||| |||||||||||||||    
T  49731186 tttgtcttgaagatgtaagatgttacatttgaccaaataataattatactactttttattaaaaacttacttgttttagttgtttaaccaatg 49731278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 35873561 - 35873495
Alignment:
Q  221 aaagaatccttgaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatta 287  Q
    |||||||| || ||||||||||||||||| ||||||||| ||| ||||||| || ||||||||||||    
T  35873561 aaagaatctttaaataaaaaatttgtcttcaaaatgtaaatttttacttttcatgaagtaataatta 35873495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 318
Target Start/End: Complemental strand, 11449158 - 11449073
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 318  Q
    ||||||||||||||||||||||| |||  |  || ||||||||| ||||||||||||  || |||| |||||||||||||| ||||    
T  11449158 aataaaaaatttgtcttaaaaatataatatgttaattttgatcatgtaataattacataactttttcataaaaacttacttatttt 11449073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 13969146 - 13969214
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 333  Q
    ||||||| || ||||||| ||||||| |  |||| |||||||||||||||||||||||| |||||||||    
T  13969146 tacttttaattaagtaattattacacaattttttcataaaaacttacttgttttggttgcttaaccaat 13969214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 338
Target Start/End: Original strand, 31884510 - 31884579
Alignment:
Q  268 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcctc 338  Q
    |||| ||||| ||||||||||| ||| |||| |||||||||||||| |||||| || ||||||||||||||    
T  31884510 tttttatcaaataataattacattactttttaataaaaacttactttttttgg-tgcttaaccaatgcctc 31884579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 328
Target Start/End: Complemental strand, 33149027 - 33148902
Alignment:
Q  201 aagggtcttgctact-agttaaaagaatccttgaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactaccttttt 299  Q
    ||||||||||||| | || | ||||||||| | | || |||||||||||| |||| |||||||  ||||    ||||||||||||||||||||| ||||     
T  33149027 aagggtcttgctaatcaggttaaagaatccataagtagaaaatttgtcttgaaaaagtaagttgttacta---atcaagtaataattacactacttttta 33148931  T
Q  300 ataaaaacttacttgttttggttgtttaa 328  Q
     ||||||||||||| |||| |||| ||||    
T  33148930 ttaaaaacttacttattttagttgcttaa 33148902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 336
Target Start/End: Complemental strand, 38597545 - 38597475
Alignment:
Q  266 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    ||||||||| ||||||| |||| || || ||||||| |||||||||||||||||| |  ||||||||||||    
T  38597545 acttttgattaagtaatgattagacaacttttttattaaaacttacttgttttggatacttaaccaatgcc 38597475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 31160824 - 31160752
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaa 306  Q
    |||| |||||||||||||||||| ||| |||  ||||||||| |||||||||||||| |  |||||||||||||    
T  31160824 aatagaaaatttgtcttaaaaatataaattttgacttttgattaagtaataattaca-tcactttttataaaaa 31160752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 26890115 - 26890183
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 333  Q
    |||||||||  || || ||||||||||||   ||||||||||||||||||||||||||  |||||||||    
T  26890115 tacttttgactaactattaattacactactcatttataaaaacttacttgttttggttacttaaccaat 26890183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 28490669 - 28490736
Alignment:
Q  238 aaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaa 306  Q
    |||||||||||||||||| |||||||  | ||||| | ||||||||||||||| | |||||||||||||    
T  28490669 aaaatttgtcttaaaaatataagttttgatttttgcttaagtaataattacac-aactttttataaaaa 28490736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 338
Target Start/End: Original strand, 40391266 - 40391337
Alignment:
Q  266 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcctc 338  Q
    |||||| ||||||||||||||||| ||| |||| ||||||||| ||||  ||||| || ||||||||||||||    
T  40391266 actttttatcaagtaataattacattactttttgataaaaactcacttcatttgg-tgcttaaccaatgcctc 40391337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 46295918 - 46295982
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaac 329  Q
    |||||||||||||||||| || |||| || |||| ||||||||||| ||||||||| || |||||    
T  46295918 tacttttgatcaagtaatcatgacacaactttttcataaaaacttatttgttttggatgcttaac 46295982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 370
Target Start/End: Original strand, 17644838 - 17644905
Alignment:
Q  303 aaaacttacttgttttggttgtttaaccaatgcctcaacgatattggctaatattctccttaatttaa 370  Q
    |||||||||||||||||| || ||||||| |||| ||| || ||||| ||  ||||||||||||||||    
T  17644838 aaaacttacttgttttggatgcttaaccattgccccaaggacattggttagcattctccttaatttaa 17644905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 36160623 - 36160564
Alignment:
Q  276 aagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgc 335  Q
    |||||||||||||||||| ||||  ||| ||||||||||||||  ||| |||||||||||    
T  36160623 aagtaataattacactactttttattaagaacttacttgttttaattgcttaaccaatgc 36160564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 336
Target Start/End: Complemental strand, 5069731 - 5069698
Alignment:
Q  303 aaaacttacttgttttggttgtttaaccaatgcc 336  Q
    |||||||||||||||||| |||||||||||||||    
T  5069731 aaaacttacttgttttggatgtttaaccaatgcc 5069698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 336
Target Start/End: Complemental strand, 27742617 - 27742549
Alignment:
Q  267 cttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    ||||| || |||||||||||||| ||| |||| ||||||| |||||| |||| |||| ||||||||||||    
T  27742617 ctttttattaagtaataattacattactttttaataaaaaattacttctttt-gttgcttaaccaatgcc 27742549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 48887824 - 48887787
Alignment:
Q  301 taaaaacttacttgttttggttgtttaaccaatgcctc 338  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  48887824 taaaaacttacttgttttagttgcttaaccaatgcctc 48887787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 50127398 - 50127451
Alignment:
Q  268 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggt 321  Q
    |||| ||| ||||||||||||| ||| |||| |||||||||||||| |||||||    
T  50127398 tttttatcgagtaataattacattactttttaataaaaacttacttcttttggt 50127451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 30109262 - 30109222
Alignment:
Q  295 tttttataaaaacttacttgttttggttgtttaaccaatgc 335  Q
    ||||||| |||||||||||||||||| ||||||| ||||||    
T  30109262 tttttattaaaacttacttgttttggatgtttaatcaatgc 30109222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 33337494 - 33337426
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 333  Q
    ||||||||||| ||||||||||||||||| | | |||||||| ||| || |||| | || |||||||||    
T  33337494 tacttttgatcgagtaataattacactacttatctataaaaatttatttattttagatgcttaaccaat 33337426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 233 - 335
Target Start/End: Complemental strand, 18131289 - 18131188
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||| |||||||||||| ||||| |||||||  |||  |||| |||||||||||||||||| |||| ||||||| |||||||||||||||| ||||||||    
T  18131289 aatagaaaatttgtcttgaaaatataagttttgactactgattaagtaataattacactac-ttttaataaaaagttacttgttttggttgcttaaccaa 18131191  T
Q  333 tgc 335  Q
    |||    
T  18131190 tgc 18131188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 260 - 337
Target Start/End: Original strand, 30924208 - 30924284
Alignment:
Q  260 gtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcct 337  Q
    |||| |||||||||| |||||||||||||||||  |||||||||||| |||||| |||||||||||| ||||||||||    
T  30924208 gtttttacttttgattaagtaataattacactat-tttttataaaaatttacttattttggttgtttgaccaatgcct 30924284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 334
Target Start/End: Complemental strand, 3137498 - 3137397
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||| ||| |||||||| |||||||||| |  |||||||||||||||||| ||||||| || |||| ||| ||||||| ||||||||| ||  |||||||    
T  3137498 aatagaaattttgtcttgaaaatgtaagatgttacttttgatcaagtaattattacacaactttttcatataaacttatttgttttggatgcctaaccaa 3137399  T
Q  333 tg 334  Q
    ||    
T  3137398 tg 3137397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 233 - 333
Target Start/End: Complemental strand, 32881211 - 32881111
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||||||| |||||||||||||| |||| |  || |||| ||||||| || ||||||| || ||||  ||||||||||||| |||||| |||||||||||    
T  32881211 aataaaaattttgtcttaaaaatataagatattattttttatcaagttatgattacacaacattttattaaaaacttacttattttggatgtttaaccaa 32881112  T
Q  333 t 333  Q
    |    
T  32881111 t 32881111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 336
Target Start/End: Complemental strand, 33621464 - 33621367
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||||||| |||||||||||||| |||  || |||||||||||||||||| ||||||      |||||| |||| ||||||||||||| |||||||||||    
T  33621464 aataaaaattttgtcttaaaaatataaaattttacttttgatcaagtaattattaca-----attttat-aaaatttacttgttttggatgtttaaccaa 33621371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 336
Target Start/End: Complemental strand, 10451997 - 10451893
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataa-ttacactacctttttat-aaaaacttacttgttttggttgtttaacc 330  Q
    |||||||| ||||| |||||||| |||||||  ||||||||| ||||||||| |||||| |  ||||||| ||||| ||||||||||| |||| ||||||    
T  10451997 aataaaaattttgtattaaaaatataagttttgacttttgattaagtaataatttacacca-ttttttataaaaaaattacttgttttagttgcttaacc 10451899  T
Q  331 aatgcc 336  Q
    ||||||    
T  10451898 aatgcc 10451893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 40607396 - 40607324
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaa 306  Q
    |||| ||||||| |||||||||| |||||||  ||||||||| ||||||||||||||||| ||||| |||||||    
T  40607396 aatagaaaatttatcttaaaaatataagttttgacttttgattaagtaataattacacta-cttttaataaaaa 40607324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 337
Target Start/End: Original strand, 34678222 - 34678325
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||| |||||||||||| |||||||||  |  ||||||||||||||||||||||||| ||  ||||||| |||| || |||||||||  || |||||||     
T  34678222 aatagaaaatttgtcttgaaaatgtaaaatgttacttttgatcaagtaataattaca-taattttttattaaaagttgcttgttttgaatgcttaaccat 34678320  T
Q  333 tgcct 337  Q
    |||||    
T  34678321 tgcct 34678325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 43917653 - 43917585
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 333  Q
    ||||||| ||||| |||||||||||| |  |||||||||||| ||||||||||||| || |||||||||    
T  43917653 tacttttaatcaaataataattacacaatttttttataaaaatttacttgttttggatgcttaaccaat 43917585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 44655286 - 44655350
Alignment:
Q  270 ttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 334  Q
    |||| ||||||||||||||||||| ||||  |||||||||| || |||||||||||||| |||||    
T  44655286 ttgaccaagtaataattacactactttttattaaaaacttatttattttggttgtttaatcaatg 44655350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 4989793 - 4989715
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttact 312  Q
    ||||||||||||||||| ||||| |||||||  | |||||||||||||| ||||||| ||  |||||||||||| |||||    
T  4989793 aataaaaaatttgtcttgaaaatataagttttgatttttgatcaagtaacaattaca-taattttttataaaaagttact 4989715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 396 - 463
Target Start/End: Complemental strand, 18117473 - 18117406
Alignment:
Q  396 tcacaacgtatttgatccacctcaatttcatgtcttgaaatgacaattcaattcgatatggtgagcat 463  Q
    |||||| || ||||||||| || ||||| ||||| | |||||||||||||||| ||||||||||||||    
T  18117473 tcacaaggtctttgatccatcttaatttgatgtcctaaaatgacaattcaattagatatggtgagcat 18117406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 265 - 334
Target Start/End: Complemental strand, 10029228 - 10029159
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 334  Q
    |||||||||||||||||| |||| || || |||| ||||||| ||||||| ||||| || ||||||||||    
T  10029228 tacttttgatcaagtaatgattatacaactttttcataaaaatttacttgatttggatgcttaaccaatg 10029159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 329
Target Start/End: Original strand, 18200696 - 18200792
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaac 329  Q
    |||||||| |||||||||||||| |||  |  |||||||||| ||||||| ||||||| |  |||| |||||| ||||||| |||||| || |||||    
T  18200696 aataaaaattttgtcttaaaaatataacatgttacttttgattaagtaatgattacacaattttttcataaaagcttacttattttggatgcttaac 18200792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 35901431 - 35901531
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||| ||| ||||| || |||||||||| |  ||||||| || || |||| ||| ||| || |||| ||||||||||||||||||||| || ||||||||    
T  35901431 aatagaaattttgttttgaaaatgtaagatgttacttttaattaaataatgattgcacaactttttcataaaaacttacttgttttggatgcttaaccaa 35901530  T
Q  333 t 333  Q
    |    
T  35901531 t 35901531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 336
Target Start/End: Complemental strand, 11151020 - 11150918
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||||||  ||||||||| |||| |||| |  ||||||||||||| |||| ||||||| |  ||||| ||||||||||||| |||||  || ||||||||    
T  11151020 aataaaatttttgtcttagaaatataagatgttacttttgatcaaataatgattacacaattttttt-taaaaacttacttattttgaatgcttaaccaa 11150922  T
Q  333 tgcc 336  Q
    ||||    
T  11150921 tgcc 11150918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 6270199 - 6270249
Alignment:
Q  268 ttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 318  Q
    ||||||| ||||||| ||||||| || ||||||| ||||||||||||||||    
T  6270199 ttttgataaagtaatgattacacaacttttttatgaaaacttacttgtttt 6270249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 20821978 - 20821908
Alignment:
Q  243 ttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttactt 313  Q
    ||||||||||||| ||| ||   |||||| || |||||||||||||| ||| |||| ||||||||||||||    
T  20821978 ttgtcttaaaaatataaattgtcactttttattaagtaataattacattactttttaataaaaacttactt 20821908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 339
Target Start/End: Original strand, 37529978 - 37530078
Alignment:
Q  242 tttgtcttaaaaatgtaagtt---tatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcctc 338  Q
    |||||||||||||| ||||||   | |||||||||| | || ||||||| || || |||| ||||||||||  || ||||| |||||||||||||| |||    
T  37529978 tttgtcttaaaaatataagttgtatctacttttgattatgttataattaaacaactttttaataaaaacttgtttcttttgattgtttaaccaatgactc 37530077  T
Q  339 a 339  Q
    |    
T  37530078 a 37530078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 27162881 - 27162832
Alignment:
Q  285 ttacactacctttttataaaaacttacttgttttggttgtttaaccaatg 334  Q
    |||||| || ||||||||||||||| |||||||||| || ||||||||||    
T  27162881 ttacacaacttttttataaaaacttgcttgttttggatgcttaaccaatg 27162832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 336
Target Start/End: Original strand, 900292 - 900351
Alignment:
Q  276 aagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    |||||||||||| | ||| |||| ||||||||||||||  ||||| |||||||||||||||    
T  900292 aagtaataattatattactttttaataaaaacttactttatttgg-tgtttaaccaatgcc 900351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 333
Target Start/End: Original strand, 17921710 - 17921802
Alignment:
Q  242 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacacta-cctttttataaaaacttacttgttttggttgtttaaccaat 333  Q
    ||||| |||||||||||| ||| ||| || ||| | |||||||||||| || | |||| ||||||| ||| ||||||||| | ||||||||||    
T  17921710 tttgttttaaaaatgtaaatttttacattcgatgatgtaataattacagtatcattttaataaaaatttaattgttttggatttttaaccaat 17921802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 20542453 - 20542382
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttat-aaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    |||||||||| ||||||| ||||||| || ||||| | ||||||||||| ||||||| || ||||||||||||    
T  20542453 tacttttgattaagtaatgattacac-acttttttcttaaaaacttactcgttttggatgcttaaccaatgcc 20542382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 28462592 - 28462658
Alignment:
Q  266 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 334  Q
    |||||| || |||||||||||||| || ||||| ||||||||||||||  ||||| |||||||||||||    
T  28462592 actttttattaagtaataattacatta-cttttaataaaaacttacttcatttgg-tgtttaaccaatg 28462658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 334
Target Start/End: Complemental strand, 10008259 - 10008190
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 334  Q
    |||||||||||||||||||||||||| || |||| |||||||||||||| ||||||||| ||||||||||    
T  10008259 tacttttgatcaagtaataattacaccactttttaataaaaacttacttcttttggttgcttaaccaatg 10008190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 334
Target Start/End: Complemental strand, 27082377 - 27082308
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 334  Q
    ||||||||||||| |||| ||||||| || |||| || |||| |||||||||||||||||||||||||||    
T  27082377 tacttttgatcaaataatcattacacaactttttcatgaaaatttacttgttttggttgtttaaccaatg 27082308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 242 - 334
Target Start/End: Original strand, 2911491 - 2911583
Alignment:
Q  242 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 334  Q
    |||||||| |||||||||| |  ||| |||||||||||||| |||| ||||| ||||| |||||||||| |||||||  ||| ||||||||||    
T  2911491 tttgtcttgaaaatgtaagatgttacatttgatcaagtaatgattatactacttttttttaaaaacttatttgttttaattgcttaaccaatg 2911583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 233 - 365
Target Start/End: Original strand, 5611144 - 5611276
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||| ||| ||||||||| |||| |||| |  ||||||| ||||| ||||||||| || || | || ||||||||||||||||||||| |||||||||||    
T  5611144 aatagaaattttgtcttagaaatataagatgttacttttaatcaaataataattatacaacttattcataaaaacttacttgttttggatgtttaaccaa 5611243  T
Q  333 tgcctcaacgatattggctaatattctccttaa 365  Q
    | |||  | |||| ||| ||  |||||||||||    
T  5611244 tacctttatgatactggttagcattctccttaa 5611276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 233 - 334
Target Start/End: Original strand, 9213059 - 9213160
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaactta---cttgttttggttgtttaac 329  Q
    ||||||||||||||||| ||||| || ||||  | ||||||||||||||||||||||||| ||||||||||||| |||   ||||||||||||  |||||    
T  9213059 aataaaaaatttgtcttgaaaat-tatgtttg-atttttgatcaagtaataattacacta-ctttttataaaaagttactgcttgttttggtttcttaac 9213155  T
Q  330 caatg 334  Q
    |||||    
T  9213156 caatg 9213160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 336
Target Start/End: Complemental strand, 6770932 - 6770828
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactaccttttt-ataaaaacttacttgttttggttgtttaacca 331  Q
    |||| ||||||| |||| ||||| ||| |||  ||||||||| || |||||||||||  || ||||| ||||||| | |||||||||||||| |||||||    
T  6770932 aatagaaaatttatcttgaaaatataaattttgacttttgattaaataataattacataactttttttataaaaagtgacttgttttggttgcttaacca 6770833  T
Q  332 atgcc 336  Q
    |||||    
T  6770832 atgcc 6770828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 18493309 - 18493241
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 333  Q
    |||||||||||||||||| ||||||  || |||||||||||||||||||| ||||  | ||||||||||    
T  18493309 tacttttgatcaagtaattattacaaaacttttttataaaaacttacttgatttgaatatttaaccaat 18493241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 336
Target Start/End: Complemental strand, 32800303 - 32800199
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacacta-cctttttataaaaacttacttgttttggttgtttaacca 331  Q
    |||| |||||||||||||||||| |||||||  | ||||||| || |||||||||||| |   |||||||||||| |||||  ||||||||| ||||| |    
T  32800303 aatagaaaatttgtcttaaaaatataagttttgatttttgattaaataataattacaccattttttttataaaaaattactacttttggttgcttaacaa 32800204  T
Q  332 atgcc 336  Q
    |||||    
T  32800203 atgcc 32800199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 2613367 - 2613448
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactaccttttta--taaaaacttact 312  Q
    |||| ||| |||||||||||||| ||||||  |||||||||||||||||||||| ||  || ||||||  ||||||||||||    
T  2613367 aatagaaattttgtcttaaaaatataagttgctacttttgatcaagtaataatttcatcacatttttatgtaaaaacttact 2613448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 306
Target Start/End: Original strand, 28048756 - 28048828
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaa 306  Q
    |||| ||||||||| |||||||| |||||||  |||||| || ||||||||||||||| | |||||||||||||    
T  28048756 aatagaaaatttgttttaaaaatataagttttgacttttaattaagtaataattacacca-ctttttataaaaa 28048828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 276 - 336
Target Start/End: Complemental strand, 31223251 - 31223190
Alignment:
Q  276 aagtaataattacactaccttttt-ataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    ||||||| ||||||| || ||||| || |||||||||||||||||| |||||||||||||||    
T  31223251 aagtaatgattacacaacttttttcatgaaaacttacttgttttggatgtttaaccaatgcc 31223190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 12677882 - 12677822
Alignment:
Q  269 tttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaac 329  Q
    ||||| |||||||| |||||||||| ||||  |||||||||||||||||| |||| |||||    
T  12677882 tttgaccaagtaatgattacactactttttattaaaaacttacttgttttagttgcttaac 12677822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 337
Target Start/End: Original strand, 17835023 - 17835095
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcct 337  Q
    |||||||||| |||||||||||| || |  |||| || ||||||| |||||||||  ||||||||||||||||    
T  17835023 tacttttgattaagtaataattatacgattttttcatgaaaacttgcttgttttgaatgtttaaccaatgcct 17835095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 19659665 - 19659725
Alignment:
Q  269 tttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaac 329  Q
    ||||||||| |||| ||||||| || ||||||||||||||||||| |||| | ||||||||    
T  19659665 tttgatcaactaatgattacacaacttttttataaaaacttacttattttagatgtttaac 19659725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 30396454 - 30396498
Alignment:
Q  293 cctttttataaaaacttacttgttttggttgtttaaccaatgcct 337  Q
    |||||||| ||||||||| ||||||| ||||||||||||||||||    
T  30396454 cctttttacaaaaacttatttgttttagttgtttaaccaatgcct 30396498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 337
Target Start/End: Original strand, 20208193 - 20208228
Alignment:
Q  302 aaaaacttacttgttttggttgtttaaccaatgcct 337  Q
    ||||| ||||||||||||||||||||||||||||||    
T  20208193 aaaaagttacttgttttggttgtttaaccaatgcct 20208228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 337
Target Start/End: Original strand, 22102216 - 22102251
Alignment:
Q  302 aaaaacttacttgttttggttgtttaaccaatgcct 337  Q
    ||||| ||||||||||||||||||||||||||||||    
T  22102216 aaaaagttacttgttttggttgtttaaccaatgcct 22102251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 319
Target Start/End: Original strand, 20208028 - 20208113
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttg 319  Q
    |||| ||||||||| || ||||| ||||| |  ||||||||| |||||||||||||| || ||||| |||||||  |||||||||||    
T  20208028 aatataaaatttgttttgaaaatataagtattgacttttgattaagtaataattacatta-cttttaataaaaagctacttgttttg 20208113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 319
Target Start/End: Original strand, 22102051 - 22102136
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttg 319  Q
    |||| ||||||||| || ||||| ||||| |  ||||||||| |||||||||||||| || ||||| |||||||  |||||||||||    
T  22102051 aatataaaatttgttttgaaaatataagtattgacttttgattaagtaataattacatta-cttttaataaaaagctacttgttttg 22102136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 2398106 - 2398050
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattaca 289  Q
    |||| ||||||| |||| ||||| |||||||  ||||||||| ||||||||||||||    
T  2398106 aatagaaaatttatcttgaaaatataagttttgacttttgattaagtaataattaca 2398050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 318
Target Start/End: Complemental strand, 22552292 - 22552241
Alignment:
Q  266 acttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 318  Q
    |||||| || |||||||||||||| || ||||||||||||| |||||||||||    
T  22552292 acttttaattaagtaataattaca-taactttttataaaaatttacttgtttt 22552241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 30699823 - 30699887
Alignment:
Q  269 tttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 333  Q
    ||||| |||||||||||||||| || ||||  |||||||||| |||||||  |||||||| ||||    
T  30699823 tttgaccaagtaataattacacaacattttattaaaaacttatttgttttaattgtttaatcaat 30699887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 224 - 336
Target Start/End: Original strand, 47445362 - 47445474
Alignment:
Q  224 gaatccttgaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttg 323  Q
    |||||||| |||| ||| ||||  || ||||| ||||||| |||||||||| |||||||||||| ||||  ||||||||||||||||| |||| |||| |    
T  47445362 gaatccttaaatagaaattttgctttgaaaatataagtttttacttttgatgaagtaataattaaactatttttttataaaaacttacatgttctggtcg 47445461  T
Q  324 tttaaccaatgcc 336  Q
     ||||||||||||    
T  47445462 cttaaccaatgcc 47445474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 334
Target Start/End: Complemental strand, 8656393 - 8656291
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttata-aaaacttacttgttttggttgtttaacca 331  Q
    |||| |||||||||||||||||  |||||||  ||||||||| |||||||||||| || || |||||||| |||| | |||||||||||||| |||||||    
T  8656393 aatagaaaatttgtcttaaaaaaataagttttaacttttgattaagtaataattataccacttttttataaaaaagtcacttgttttggttgcttaacca 8656294  T
Q  332 atg 334  Q
    |||    
T  8656293 atg 8656291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 242 - 336
Target Start/End: Complemental strand, 16980031 - 16979937
Alignment:
Q  242 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    |||||||| ||||| |||| |  ||||||||||| ||||||||| |||| || |||| ||||||| ||||||||||||| || ||||||||||||    
T  16980031 tttgtcttgaaaatataagatgttacttttgatcgagtaataatcacacaactttttcataaaaatttacttgttttggatgcttaaccaatgcc 16979937  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 334
Target Start/End: Complemental strand, 37928363 - 37928297
Alignment:
Q  268 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 334  Q
    ||||||| ||||||| ||||||| || ||||||||||||||||||| |||||| |||||||||||||    
T  37928363 ttttgataaagtaattattacacaacttttttataaaaacttacttattttggatgtttaaccaatg 37928297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 337
Target Start/End: Original strand, 39786467 - 39786571
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttat-aaaaacttacttgttttggttgtttaacca 331  Q
    |||| |||| ||||||| ||||| |||||||  ||||||||| || |||||||||||||| ||||| || ||||| ||| |||||||||||| |||||||    
T  39786467 aatagaaaacttgtcttgaaaatataagttttaacttttgattaaataataattacacta-cttttaataaaaaagttatttgttttggttgcttaacca 39786565  T
Q  332 atgcct 337  Q
    ||||||    
T  39786566 atgcct 39786571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 334
Target Start/End: Complemental strand, 47537519 - 47537423
Alignment:
Q  237 aaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 334  Q
    ||||||||||||| ||||| |||||||  | ||||||| ||||||||||||||| | ||||||||||||| |||| |||||| |||| ||||| ||||    
T  47537519 aaaaatttgtcttgaaaatataagttttgatttttgattaagtaataattacac-aactttttataaaaagttacctgttttagttgcttaactaatg 47537423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 23142702 - 23142770
Alignment:
Q  268 ttttgatcaagtaataattacactaccttttt-ataaaaacttacttgttttggttgtttaaccaatgc 335  Q
    ||||||||||||||| ||||||| || ||||| |||||||||||||| |||||| ||||||||||||||    
T  23142702 ttttgatcaagtaattattacacaacttttttcataaaaacttacttattttggatgtttaaccaatgc 23142770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 336
Target Start/End: Complemental strand, 24937929 - 24937827
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||| ||||||||| |||||||| ||  |||  |||||| || ||||||||||||||| || |||||||||||| |||||| ||||||||  ||||||||    
T  24937929 aatagaaaatttgttttaaaaatatagattttgacttttaattaagtaataattacaccac-tttttataaaaagttacttattttggttccttaaccaa 24937831  T
Q  333 tgcc 336  Q
    ||||    
T  24937830 tgcc 24937827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 244 - 334
Target Start/End: Original strand, 41760365 - 41760455
Alignment:
Q  244 tgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 334  Q
    |||||||||||||||||||| || |||| |||||||||| ||||||| || |||| |||||| |||| |  |||||| || ||||||||||    
T  41760365 tgtcttaaaaatgtaagtttttattttttatcaagtaattattacacaactttttaataaaatcttattctttttggatgcttaaccaatg 41760455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 330
Target Start/End: Complemental strand, 34834773 - 34834696
Alignment:
Q  251 aaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaacc 330  Q
    ||||||||||||| || ||||||| |||||||||||  ||||||| |||||||||||||   ||||||||||| ||||||    
T  34834773 aaaatgtaagtttttatttttgatgaagtaataatt--actacctctttataaaaacttgaatgttttggttgcttaacc 34834696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 8896613 - 8896698
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 318  Q
    |||| ||| |||||||||||||| |||| |  |||||||||||| ||||| ||||||| |  |||| || ||||||||||||||||    
T  8896613 aatataaattttgtcttaaaaatataagatgttacttttgatcaggtaatgattacacaattttttcatgaaaacttacttgtttt 8896698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 336
Target Start/End: Original strand, 7833794 - 7833862
Alignment:
Q  268 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    |||||| ||| |||| ||| |||||| |||| |||||| |||||||||||||| || ||||||||||||    
T  7833794 ttttgaccaactaattattgcactactttttaataaaatcttacttgttttggctgcttaaccaatgcc 7833862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 334
Target Start/End: Original strand, 22931882 - 22931974
Alignment:
Q  242 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatg 334  Q
    ||||||| | |||||||||||  |||  |||  ||| ||||||||||||||| ||||  | |||| |||||| ||||||||||||||||||||    
T  22931882 tttgtctcagaaatgtaagttgttacaattgcccaattaataattacactactttttattgaaaatttacttattttggttgtttaaccaatg 22931974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 333
Target Start/End: Complemental strand, 33194832 - 33194720
Alignment:
Q  221 aaagaatccttgaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttgg 320  Q
    ||||||||| | |||||||  |||||||||||||| |||  |   || |||||| ||||||| |||||||||| ||||  |||||| |||||| |||| |    
T  33194832 aaagaatccataaataaaagttttgtcttaaaaatataaactatcacatttgattaagtaatgattacactactttttattaaaaatttacttattttag 33194733  T
Q  321 ttgtttaaccaat 333  Q
    ||| |||||||||    
T  33194732 ttgcttaaccaat 33194720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 314
Target Start/End: Original strand, 34993152 - 34993224
Alignment:
Q  242 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttg 314  Q
    |||||||||||||| |||| |  |||||||||| || |||||||||||| || |||| || ||||||||||||    
T  34993152 tttgtcttaaaaatataagatgttacttttgataaaataataattacacaactttttcatgaaaacttacttg 34993224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 45907082 - 45907134
Alignment:
Q  266 acttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 318  Q
    |||||| ||||||||||||||||| ||| |||| |||||||||||||| ||||    
T  45907082 actttttatcaagtaataattacattactttttaataaaaacttacttctttt 45907134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 336
Target Start/End: Original strand, 12810166 - 12810265
Alignment:
Q  237 aaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    |||| |||||||||||||| |||| |  |||||||||  ||||||||||||||| || |||| || ||| | | |||||||| | |||||||||| ||||    
T  12810166 aaaattttgtcttaaaaatataagatattacttttgacaaagtaataattacacaactttttcatgaaagcatgcttgttttagatgtttaaccattgcc 12810265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 37532574 - 37532668
Alignment:
Q  238 aaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttat-aaaaacttacttgttttggttgtttaacca 331  Q
    ||||||| | |||||||| ||| |||  ||||||||| ||| ||||||||||| |  ||||||| ||||| |||||||||| ||||| |||||||    
T  37532574 aaaatttatattaaaaatataaatttcgacttttgattaagaaataattacaccatttttttataaaaaagttacttgtttcggttgcttaacca 37532668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 319
Target Start/End: Complemental strand, 39387003 - 39386917
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttg 319  Q
    |||||||||||| || ||||||| ||| |||  |||||||||||||||||||| | || || |||   |||||| ||||||||||||    
T  39387003 aataaaaaatttatcctaaaaatataaattttaacttttgatcaagtaataatcatacaacttttcattaaaaaattacttgttttg 39386917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 16685794 - 16685729
Alignment:
Q  269 tttgatcaagtaataattacactaccttttta-taaaaacttacttgttttggttgtttaaccaat 333  Q
    |||||||||||||| ||||||| || |||| | ||||||||||||| |||||| || |||||||||    
T  16685794 tttgatcaagtaatgattacacaactttttaaataaaaacttacttattttggatgcttaaccaat 16685729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 17660030 - 17659965
Alignment:
Q  269 tttgatcaagtaataattacactaccttttta-taaaaacttacttgttttggttgtttaaccaat 333  Q
    |||||||||||||| ||||||| || |||| | ||||||||||||| |||||| || |||||||||    
T  17660030 tttgatcaagtaatgattacacaactttttaaataaaaacttacttattttggatgcttaaccaat 17659965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 23317845 - 23317894
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttg 314  Q
    ||||||||||||||| || ||||||| || ||||||| ||||||||||||    
T  23317845 tacttttgatcaagttatgattacaccacttttttatgaaaacttacttg 23317894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 25780298 - 25780245
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatt 286  Q
    |||||||||||||||| |||||| |||||||  |||||| || |||||||||||    
T  25780298 aataaaaaatttgtctgaaaaatataagttttgacttttaattaagtaataatt 25780245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 26241656 - 26241717
Alignment:
Q  269 tttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaacc 330  Q
    ||||||||| ||||||||| ||||| ||||  |||||| ||||||||||| |||| ||||||    
T  26241656 tttgatcaaataataattatactactttttattaaaaagttacttgttttagttgcttaacc 26241717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 33988492 - 33988545
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 318  Q
    ||||||| || |||||||| ||||||| |||||||||||||| ||| |||||||    
T  33988492 tactttttataaagtaatatttacacttcctttttataaaaatttagttgtttt 33988545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 326
Target Start/End: Complemental strand, 46300762 - 46300678
Alignment:
Q  242 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaa-cttacttgttttggttgttt 326  Q
    |||||||| ||||| || ||||  |||||| |||| |||||||||||| |  ||||||||||||| |||||||||||| |||||||    
T  46300762 tttgtcttgaaaatatatgttttgactttttatcatgtaataattaca-tcactttttataaaaaccttacttgttttagttgttt 46300678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 21164729 - 21164669
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactac 293  Q
    |||| ||| |||| ||| |||||| |||||| || ||||||| ||||||||||||||||||    
T  21164729 aatagaaattttgacttgaaaatgcaagtttttatttttgatgaagtaataattacactac 21164669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 42061270 - 42061222
Alignment:
Q  287 acactacctttttataaaaacttacttgttttggttgtttaaccaatgc 335  Q
    |||||| |||||  |||||||||||||||||| |||| |||||||||||    
T  42061270 acactatcttttattaaaaacttacttgttttagttgcttaaccaatgc 42061222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 265 - 337
Target Start/End: Original strand, 30034 - 30106
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcct 337  Q
    ||||||| || || |||||||||||| | ||||| ||||||||||||||||||||  ||||||||||||||||    
T  30034 tacttttaattaaataataattacacaaacttttcataaaaacttacttgttttgagtgtttaaccaatgcct 30106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 249 - 333
Target Start/End: Complemental strand, 4490862 - 4490779
Alignment:
Q  249 taaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 333  Q
    ||||||| ||| ||| |||||||||| || |||||||||||||| ||||| || |||||||| |||||||| |||||||||||||    
T  4490862 taaaaatataaatttttacttttgataaaataataattacactatcttttaat-aaaacttatttgttttgattgtttaaccaat 4490779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 242 - 318
Target Start/End: Complemental strand, 29032501 - 29032425
Alignment:
Q  242 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgtttt 318  Q
    |||||||||||||| |||| |  |||||||||||||||||| ||||||| || |||| |||||||||| ||||||||    
T  29032501 tttgtcttaaaaatataagatgttacttttgatcaagtaatgattacacaactttttcataaaaacttgcttgtttt 29032425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 268 - 336
Target Start/End: Complemental strand, 48338876 - 48338808
Alignment:
Q  268 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    ||||||| ||||||| ||||||| || |||||||||||||||||||||||||| || ||||||| ||||    
T  48338876 ttttgataaagtaattattacacaacttttttataaaaacttacttgttttggatgcttaaccattgcc 48338808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 34228273 - 34228372
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaa 332  Q
    ||||||||||||||||||||||| ||| |||  ||||||||| || |||||||| || |  ||||||||||||| ||||| |||||  ||| ||||||||    
T  34228273 aataaaaaatttgtcttaaaaatataaattttgacttttgattaaataataatttca-tcactttttataaaaagttactcgttttaattgcttaaccaa 34228371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 331
Target Start/End: Original strand, 37043037 - 37043099
Alignment:
Q  269 tttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaacca 331  Q
    |||||||||||||| |||| ||||| ||||  |||||||||||||| ||| ||||||||||||    
T  37043037 tttgatcaagtaatgattatactactttttattaaaaacttacttgatttagttgtttaacca 37043099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 334
Target Start/End: Original strand, 45408684 - 45408784
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaac-ttacttgttttggttgtttaacca 331  Q
    ||||||| ||||||||||||||| ||| |||  ||||| ||| |||||||| |||||| |  ||||||||||||  ||||||||||| ||||||||||||    
T  45408684 aataaaatatttgtcttaaaaatataacttttgacttt-gattaagtaatatttacaccat-tttttataaaaatgttacttgtttttgttgtttaacca 45408781  T
Q  332 atg 334  Q
    |||    
T  45408782 atg 45408784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 55446830 - 55446733
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaacca 331  Q
    |||||||| ||||||||  |||| |||| |  ||||||| || ||||||| ||||||| || ||||||||||||||||||| |||| | ||||||||||    
T  55446830 aataaaaattttgtcttggaaatataagatgttacttttaataaagtaatgattacacaac-tttttataaaaacttacttcttttagatgtttaacca 55446733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 331
Target Start/End: Original strand, 2127368 - 2127461
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaacca 331  Q
    ||||||||||||||||||| ||| |   |||  | ||||||| ||||||||||||||| ||  ||||||||||| |||||| ||||||||| |||||||    
T  2127368 aataaaaaatttgtcttaagaatat---ttttgatttttgattaagtaataattacacgac--ttttataaaaaattacttattttggttgcttaacca 2127461  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 244 - 333
Target Start/End: Original strand, 2379631 - 2379719
Alignment:
Q  244 tgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 333  Q
    |||||| ||||||||||||  | ||||  ||||||||| ||||||||||| |||| |||||||||||||| ||||| ||| |||| ||||    
T  2379631 tgtcttgaaaatgtaagttgttccttta-atcaagtaagaattacactactttttaataaaaacttacttattttgattgcttaatcaat 2379719  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 4020161 - 4020096
Alignment:
Q  268 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 333  Q
    ||||||| ||||||| ||||||| |  |||| |||||||||||||||||||||||  |||||||||    
T  4020161 ttttgattaagtaattattacacaattttttcataaaaacttacttgttttggttacttaaccaat 4020096  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 266 - 335
Target Start/End: Original strand, 15671165 - 15671233
Alignment:
Q  266 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgc 335  Q
    |||||| ||||||||||||||||| ||| |||| ||||||||||||||  |||||||  |||||||||||    
T  15671165 actttttatcaagtaataattacattactttttaataaaaacttacttcatttggtt-cttaaccaatgc 15671233  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 337
Target Start/End: Original strand, 42788343 - 42788448
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacacta-cctttttataaaaacttacttgttttggttgtttaacca 331  Q
    ||||| || ||||| || ||||||||| ||| |||||||||| || ||||||||||| ||   |||||||||||||||||  |||||| |||||||| ||    
T  42788343 aataacaattttgtattgaaaatgtaaatttttacttttgataaaataataattacattattttttttataaaaacttaccagttttgattgtttaatca 42788442  T
Q  332 atgcct 337  Q
     |||||    
T  42788443 gtgcct 42788448  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 54801346 - 54801431
Alignment:
Q  234 ataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttg 319  Q
    ||||||||||| |||| ||||| |||| |  |||||||| | ||||||||||||||| |  |||| |||||||||||||| |||||    
T  54801346 ataaaaaatttatcttgaaaatataagatgttacttttgctaaagtaataattacacaattttttcataaaaacttacttattttg 54801431  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 41287898 - 41287969
Alignment:
Q  233 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaa 305  Q
    |||| ||||||||| |||||||| |||||||  | ||||||| |||||||||||||||||  |||||||||||    
T  41287898 aatagaaaatttgttttaaaaatataagttttgatttttgattaagtaataattacacta-ttttttataaaa 41287969  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 35322074 - 35322019
Alignment:
Q  266 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggt 321  Q
    |||||| || |||||||||||||| ||| |||| |||||||||||||| |||||||    
T  35322074 actttttattaagtaataattacattactttttaataaaaacttacttcttttggt 35322019  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 31069612 - 31069670
Alignment:
Q  270 ttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaa 328  Q
    |||| ||||||||||||||||||| ||||  ||||||| ||||| ||||||||| ||||    
T  31069612 ttgaccaagtaataattacactactttttattaaaaacgtacttattttggttgcttaa 31069670  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 330
Target Start/End: Original strand, 31494055 - 31494117
Alignment:
Q  268 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaacc 330  Q
    |||| ||||| |||| ||||||| |  |||| ||||||||||||||||||||| |||||||||    
T  31494055 ttttaatcaaataatgattacacaattttttcataaaaacttacttgttttggatgtttaacc 31494117  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 336
Target Start/End: Original strand, 42163655 - 42163724
Alignment:
Q  266 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    |||||| || |||||||||||||| ||| |||| ||||||||||||||  ||||| ||| |||||||||||    
T  42163655 actttttattaagtaataattacattactttttaataaaaacttacttcatttgg-tgtgtaaccaatgcc 42163724  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 336
Target Start/End: Original strand, 44291278 - 44291347
Alignment:
Q  266 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    |||||| || |||||||||||||| ||| |||| ||||| |||||||| |||||| || ||||||||||||    
T  44291278 actttttattaagtaataattacattactttttaataaatacttacttcttttgg-tgcttaaccaatgcc 44291347  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 6785841 - 6785910
Alignment:
Q  265 tacttttgatcaagtaataattacactaccttttt-ataaaaacttacttgttttggttgtttaaccaat 333  Q
    |||||||||||||||||| |||||||  | ||||| || ||||||| |||||||| | ||||||||||||    
T  6785841 tacttttgatcaagtaatgattacacatcttttttcatgaaaacttgcttgtttttgatgtttaaccaat 6785910  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 26613115 - 26613180
Alignment:
Q  268 ttttgatcaagtaataattacactaccttttt-ataaaaacttacttgttttggttgtttaaccaa 332  Q
    |||| |||||||||||||||||  || ||||| || |||||||||||||||||| || ||||||||    
T  26613115 ttttaatcaagtaataattacataactttttttatgaaaacttacttgttttggatgcttaaccaa 26613180  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 334
Target Start/End: Original strand, 40491240 - 40491320
Alignment:
Q  254 atgtaagtttatacttttgatcaagtaataattacactacctttttataaaaact-tacttgttttggttgtttaaccaatg 334  Q
    |||||||||  ||||||| |||| |||||||||||| ||  |||| ||||||| | || |||||||||||||||||||||||    
T  40491240 atgtaagttgttacttttcatcatgtaataattacattatatttt-ataaaaaatatatttgttttggttgtttaaccaatg 40491320  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 336
Target Start/End: Original strand, 4128743 - 4128811
Alignment:
Q  268 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcc 336  Q
    ||||||| ||||||| ||||||| |  |||| || |||||||||||||||||| || ||||||| ||||    
T  4128743 ttttgataaagtaatgattacacaatattttcatgaaaacttacttgttttggatgcttaaccattgcc 4128811  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 25958075 - 25958131
Alignment:
Q  234 ataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 290  Q
    |||||||||||||||||||||| |||| |  |||||||||| ||||||  |||||||    
T  25958075 ataaaaaatttgtcttaaaaatataagatgttacttttgataaagtaacgattacac 25958131  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 28709613 - 28709681
Alignment:
Q  265 tacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 333  Q
    ||||||||||||| |||| |||| || || |||||||| |||||||||| |||||  || |||||||||    
T  28709613 tacttttgatcaaataatgattatacaacttttttatagaaacttacttattttgaatgcttaaccaat 28709681  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 40843124 - 40843060
Alignment:
Q  269 tttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaat 333  Q
    ||||||||||||||||||| | ||| ||||  |||||| ||| || |||| ||||||||||||||    
T  40843124 tttgatcaagtaataattatattactttttattaaaaatttatttattttagttgtttaaccaat 40843060  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 50958923 - 50958871
Alignment:
Q  268 ttttgatcaagtaataattacactacctttttataaaaacttacttgttttgg 320  Q
    ||||||||||| ||| ||||||| |  |||| |||||||||||||||||||||    
T  50958923 ttttgatcaagaaatgattacacaattttttcataaaaacttacttgttttgg 50958871  T

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Target: scaffold0034 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 338
Target Start/End: Original strand, 22472 - 22543
Alignment:
Q  266 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaaccaatgcctc 338  Q
    |||||| ||||| ||||||||||| |||  ||| |||||||||||||| |||||| || ||||||||||||||    
T  22472 actttttatcaaataataattacattactctttaataaaaacttacttcttttgg-tgcttaaccaatgcctc 22543  T

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Target: scaffold0017 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 333
Target Start/End: Complemental strand, 31504 - 31466
Alignment:
Q  295 tttttataaaaacttacttgttttggttgtttaaccaat 333  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  31504 tttttataaaaagttacttgttttggttgcttaaccaat 31466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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