View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_16 (Length: 513)
Name: NF16735_low_16
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 42124969 - 42125463
Alignment:
| Q |
1 |
aagctattactatgtcttactatgatagggtagcttttcccagggtgaaaaatcttgtgcattggaataccctcaagtttgttgtatatttttaagtgcc |
100 |
Q |
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| T |
42124969 |
aagctattactatgtcttactatgatagggtagcttttcccagggtgaaaaatcttgtgcattggaataccctcaagtttgttgtatatttttaagtgcc |
42125068 |
T |
|
| Q |
101 |
cctttccactaacaccgatgcgatgaaaatatcttgctttagcattcatagttgttacagctaaatttgcagccaaattagcaactattttcttgtagtc |
200 |
Q |
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| T |
42125069 |
cttttccactaacaccgatgcgatgaaaatatcttgctttagcattcatagttgttacagctaaatttgcagccaaatttgcaactattttcttgtagtc |
42125168 |
T |
|
| Q |
201 |
aatgtccatctcctctattctttcatcaaaattagcatttcccaagttccgcattgtaactcgggtttgagatccaatgtaaacactaccttcatgtagt |
300 |
Q |
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| T |
42125169 |
aatgtccatctcctctattctttcatcaaaactagcatttcccgagttccgcattgtaactcgggtttgagatccaatgtaaacactaccttcatgtagt |
42125268 |
T |
|
| Q |
301 |
atagagttcattggagcaaccgaaagtgcacctagaatgacattcttttcaacaagtgaaccagggagaattaggctttgactaccgacaaccgagttat |
400 |
Q |
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| T |
42125269 |
atagagttcattggagcaactgaaagtgcacctagaatgacattcttttcaacaagtgaaccagggagaattaggctttgactacctacaaccgagttat |
42125368 |
T |
|
| Q |
401 |
cttgaacctctatttttccacaagtgtatccatcagaatagttgaaaccagtgattatgcggctaaagtcaccaagatgaacaccatcaccaatt |
495 |
Q |
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| T |
42125369 |
cttgaacctctatttttccacaagtgtatccatcagaatagttgaaaccagtgattatgcggctaaagtcaccaagatgaacaccatcaccaatt |
42125463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 433
Target Start/End: Original strand, 24928535 - 24928697
Alignment:
| Q |
271 |
gatccaatgtaaacactaccttcatgtagtatagagttcattggagcaaccgaaagtgcacctagaatgacattcttttcaacaagtgaaccagggagaa |
370 |
Q |
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||||||||||| | | |||||| || ||| |||||||||||||||| | ||||||||||| || || |||||||||| | || |||||||| || | |
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| T |
24928535 |
gatccaatgtataagccaccttcttggagtgtagagttcattggagctaatgaaagtgcaccaaggatcacattcttttggatgagagaaccaggaagga |
24928634 |
T |
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| Q |
371 |
ttaggctttgactaccgacaaccgagttatcttgaacctctatttttccacaagtgtatccat |
433 |
Q |
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| T |
24928635 |
ttaggctttgacttccggtcactgaattatcttgaacctcgatttttccggaagtatatccat |
24928697 |
T |
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