View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16735_low_17 (Length: 482)

Name: NF16735_low_17
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16735_low_17
NF16735_low_17
[»] chr3 (7 HSPs)
chr3 (20-468)||(48606739-48607193)
chr3 (293-403)||(48922631-48922741)
chr3 (293-410)||(5739526-5739643)
chr3 (293-410)||(5776638-5776755)
chr3 (406-462)||(5739664-5739720)
chr3 (406-462)||(5776776-5776832)
chr3 (406-462)||(48922547-48922603)
[»] chr8 (6 HSPs)
chr8 (293-410)||(26665993-26666110)
chr8 (293-410)||(4783237-4783354)
chr8 (406-462)||(26665916-26665972)
chr8 (296-368)||(39479413-39479485)
chr8 (405-462)||(4783163-4783220)
chr8 (361-410)||(39478740-39478789)
[»] chr2 (4 HSPs)
chr2 (293-410)||(43784826-43784943)
chr2 (293-403)||(9795046-9795155)
chr2 (406-468)||(43784743-43784805)
chr2 (406-462)||(9794962-9795018)
[»] chr1 (2 HSPs)
chr1 (293-410)||(23761186-23761303)
chr1 (406-468)||(23761103-23761165)
[»] chr4 (2 HSPs)
chr4 (293-410)||(22734515-22734632)
chr4 (406-462)||(22734438-22734494)
[»] chr6 (2 HSPs)
chr6 (293-408)||(30338656-30338771)
chr6 (406-462)||(30338794-30338850)


Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 20 - 468
Target Start/End: Original strand, 48606739 - 48607193
Alignment:
Q  20 gtctgagtctgaatgatgcttcaacttcaaccatgatgatcagtgccatcggagatgatgatgcttattctctctgaaacagggggaaccaatttcaaat 119  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48606739 gtctgagtctgagtgatgcttcaacttcaaccatgatgatcagtgtcatcggagatgatgatgcttattctctctgaaacagggggaaccaatttcaaat 48606838  T
Q  120 attgaatcaatgtcattgtcatgtcatggacc---ctatattattttcatattttatgtagatttaaataagtttttaatttaactttggctttcacatg 216  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  48606839 attgaatcaatgtcattgtcatgtcatggacccttctatattattttcatattttatgtagatttaaataaatttttaatttaactttggctttcacatg 48606938  T
Q  217 tttttccattttagctaattactatagtttaagagatgttattcgtaaatataggtatctccctcggttaatcctt--------atgaatgtaaagtaac 308  Q
    || ||||||||||||||||   ||||||||||||||||||||||||||  ||| ||||||||||| ||||||||||        ||||||||||||||||    
T  48606939 ttcttccattttagctaat---tatagtttaagagatgttattcgtaa--ataagtatctccctcagttaatccttataacataatgaatgtaaagtaac 48607033  T
Q  309 caataaaagtagtatgataaagtttaagttagtcctaatttaaaataatgataacaaatcgataaggtcatagtatagttattgttaacgttttatattc 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  48607034 caataaaagtagtatgataaagtttaagttagtcctaatttaaaataatgataacaaatcgataaggtcatagtctagttattgttaacgttttacattc 48607133  T
Q  409 atggtaaacgacatttgatagggagaacactcttctttcttctatatccatatcctatgc 468  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48607134 atggtaaatgacatttgatagggagaacactcttctttcttctatatccatatcatatgc 48607193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 293 - 403
Target Start/End: Complemental strand, 48922741 - 48922631
Alignment:
Q  293 atgaatgtaaagtaaccaataaaagtagtatgataaagtttaagttagtcctaatttaaaataatgataacaaatcgataaggtcatagtatagttattg 392  Q
    ||||||||| |||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48922741 atgaatgtatagtaaccaataaaagtagcatgacaaagtttaagttagccctaatttaaaataatgataacaaatcgataaggtcatagtctagttattg 48922642  T
Q  393 ttaacgtttta 403  Q
    |||||||||||    
T  48922641 ttaacgtttta 48922631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 293 - 410
Target Start/End: Original strand, 5739526 - 5739643
Alignment:
Q  293 atgaatgtaaagtaaccaataaaagtagtatgataaagtttaagttagtcctaatttaaaataatgataacaaatcgataaggtcatagtatagttattg 392  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  5739526 atgaatgtatagtaaacaataaaagtaggatgataaagtttaagttagccctaatttaaaataatgataacaaatcgataaggtcatagtctagttatta 5739625  T
Q  393 ttaacgttttatattcat 410  Q
    ||||||||||| ||||||    
T  5739626 ttaacgttttacattcat 5739643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 293 - 410
Target Start/End: Original strand, 5776638 - 5776755
Alignment:
Q  293 atgaatgtaaagtaaccaataaaagtagtatgataaagtttaagttagtcctaatttaaaataatgataacaaatcgataaggtcatagtatagttattg 392  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  5776638 atgaatgtatagtaaacaataaaagtaggatgataaagtttaagttagccctaatttaaaataatgataacaaatcgataaggtcatagtctagttatta 5776737  T
Q  393 ttaacgttttatattcat 410  Q
    ||||||||||| ||||||    
T  5776738 ttaacgttttacattcat 5776755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 406 - 462
Target Start/End: Original strand, 5739664 - 5739720
Alignment:
Q  406 ttcatggtaaacgacatttgatagggagaacactcttctttcttctatatccatatc 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5739664 ttcatggtaaacgacatttgatagggagaacactcttctttcttctatatccatatc 5739720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 406 - 462
Target Start/End: Original strand, 5776776 - 5776832
Alignment:
Q  406 ttcatggtaaacgacatttgatagggagaacactcttctttcttctatatccatatc 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5776776 ttcatggtaaacgacatttgatagggagaacactcttctttcttctatatccatatc 5776832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 462
Target Start/End: Complemental strand, 48922603 - 48922547
Alignment:
Q  406 ttcatggtaaacgacatttgatagggagaacactcttctttcttctatatccatatc 462  Q
    |||| |||||||||||||| | | ||||||||||||||||| |||||||||||||||    
T  48922603 ttcacggtaaacgacattttacacggagaacactcttctttattctatatccatatc 48922547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 293 - 410
Target Start/End: Complemental strand, 26666110 - 26665993
Alignment:
Q  293 atgaatgtaaagtaaccaataaaagtagtatgataaagtttaagttagtcctaatttaaaataatgataacaaatcgataaggtcatagtatagttattg 392  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  26666110 atgaatgtatagtaaccaataaaagtagcatgataaagtttaagttagccctaatttaaaataatgataacaaatcgataaggtcatattctagttattg 26666011  T
Q  393 ttaacgttttatattcat 410  Q
    ||||||||||| ||||||    
T  26666010 ttaacgttttacattcat 26665993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 293 - 410
Target Start/End: Complemental strand, 4783354 - 4783237
Alignment:
Q  293 atgaatgtaaagtaaccaataaaagtagtatgataaagtttaagttagtcctaatttaaaataatgataacaaatcgataaggtcatagtatagttattg 392  Q
    ||||||||| | |||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4783354 atgaatgtacaataaccaataaaaatagcatgataaagtttaagttagccctaatttaaaataatgataacaaatcgataaggtcatagtctagttattg 4783255  T
Q  393 ttaacgttttatattcat 410  Q
    |||| |||||| ||||||    
T  4783254 ttaatgttttacattcat 4783237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 406 - 462
Target Start/End: Complemental strand, 26665972 - 26665916
Alignment:
Q  406 ttcatggtaaacgacatttgatagggagaacactcttctttcttctatatccatatc 462  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26665972 ttcatggttaacgacatttgatagggagaacactcttctttcttctatatccatatc 26665916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 296 - 368
Target Start/End: Complemental strand, 39479485 - 39479413
Alignment:
Q  296 aatgtaaagtaaccaataaaagtagtatgataaagtttaagttagtcctaatttaaaataatgataacaaatc 368  Q
    |||||| |||||||||||||| ||| ||||||||||||||||||  |||||||||||||||||||||||||||    
T  39479485 aatgtatagtaaccaataaaaatagcatgataaagtttaagttaaccctaatttaaaataatgataacaaatc 39479413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 405 - 462
Target Start/End: Complemental strand, 4783220 - 4783163
Alignment:
Q  405 attcatggtaaacgacatttgatagggagaacactcttctttcttctatatccatatc 462  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  4783220 attcatggtaaacgacatttaatagagagaacactcttctttcttctatatccatatc 4783163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 39478789 - 39478740
Alignment:
Q  361 aacaaatcgataaggtcatagtatagttattgttaacgttttatattcat 410  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||||    
T  39478789 aacaaatcgataacgtcatagtctagttattgttaacgttttacattcat 39478740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 293 - 410
Target Start/End: Complemental strand, 43784943 - 43784826
Alignment:
Q  293 atgaatgtaaagtaaccaataaaagtagtatgataaagtttaagttagtcctaatttaaaataatgataacaaatcgataaggtcatagtatagttattg 392  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43784943 atgaatgtatagtaaccaataaaagtagcatgataaagtttaagttagccctaatttaaaataatgataacaaatcgataaggtcatagtctagttattg 43784844  T
Q  393 ttaacgttttatattcat 410  Q
    |||| |||||| ||||||    
T  43784843 ttaatgttttacattcat 43784826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 293 - 403
Target Start/End: Complemental strand, 9795155 - 9795046
Alignment:
Q  293 atgaatgtaaagtaaccaataaaagtagtatgataaagtttaagttagtcctaatttaaaataatgataacaaatcgataaggtcatagtatagttattg 392  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| |||||||||    
T  9795155 atgaatgtatagtaaccaataaaagtagcatgataaagtttaagttagccataatttaaaataatgataacaaatcgataagg-catagtctagttattg 9795057  T
Q  393 ttaacgtttta 403  Q
    |||||||||||    
T  9795056 ttaacgtttta 9795046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 406 - 468
Target Start/End: Complemental strand, 43784805 - 43784743
Alignment:
Q  406 ttcatggtaaacgacatttgatagggagaacactcttctttcttctatatccatatcctatgc 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43784805 ttcatggtaaacgacatttgatagggagaacactcttctttcttctatatccatatcatatgc 43784743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 406 - 462
Target Start/End: Complemental strand, 9795018 - 9794962
Alignment:
Q  406 ttcatggtaaacgacatttgatagggagaacactcttctttcttctatatccatatc 462  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  9795018 ttcatggtaaacgacatttgataaggagaacactcttcattcttctatatccatatc 9794962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 293 - 410
Target Start/End: Complemental strand, 23761303 - 23761186
Alignment:
Q  293 atgaatgtaaagtaaccaataaaagtagtatgataaagtttaagttagtcctaatttaaaataatgataacaaatcgataaggtcatagtatagttattg 392  Q
    ||||||||| |||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23761303 atgaatgtatagtaaccaataaaagtagcataataaagtttaagttagccctaatttaaaataatgataacaaatcgataaggtcatagtctagttattg 23761204  T
Q  393 ttaacgttttatattcat 410  Q
    ||||||||||| ||||||    
T  23761203 ttaacgttttacattcat 23761186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 406 - 468
Target Start/End: Complemental strand, 23761165 - 23761103
Alignment:
Q  406 ttcatggtaaacgacatttgatagggagaacactcttctttcttctatatccatatcctatgc 468  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  23761165 ttcatggtaaacgacatttgatagggagaacactattctttcttctatatccatatcatatgc 23761103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 293 - 410
Target Start/End: Complemental strand, 22734632 - 22734515
Alignment:
Q  293 atgaatgtaaagtaaccaataaaagtagtatgataaagtttaagttagtcctaatttaaaataatgataacaaatcgataaggtcatagtatagttattg 392  Q
    ||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  22734632 atgaatgtatagtaaccaatagaagtagcatgataaagtttaagttagccctaatataaaataatgataacaaatcgataaggtcatagtctagttattg 22734533  T
Q  393 ttaacgttttatattcat 410  Q
    ||||||||||| ||||||    
T  22734532 ttaacgttttacattcat 22734515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 406 - 462
Target Start/End: Complemental strand, 22734494 - 22734438
Alignment:
Q  406 ttcatggtaaacgacatttgatagggagaacactcttctttcttctatatccatatc 462  Q
    |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  22734494 ttcatggttaacaacatttgatagggagaacattcttctttcttctatatccatatc 22734438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 293 - 408
Target Start/End: Original strand, 30338656 - 30338771
Alignment:
Q  293 atgaatgtaaagtaaccaataaaagtagtatgataaagtttaagttagtcctaatttaaaataatgataacaaatcgataaggtcatagtatagttattg 392  Q
    ||||||||| |||||| ||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30338656 atgaatgtatagtaacaaataaaagtagcatgataaagtttaagtttgccctaatttaaaataatgataacaaatcgataaggtcatagtctagttattg 30338755  T
Q  393 ttaacgttttatattc 408  Q
    ||||| ||||| ||||    
T  30338756 ttaacattttacattc 30338771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 406 - 462
Target Start/End: Original strand, 30338794 - 30338850
Alignment:
Q  406 ttcatggtaaacgacatttgatagggagaacactcttctttcttctatatccatatc 462  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  30338794 ttcatggtaaacgacatttgataggtagaacattcttctttcttctatatccatatc 30338850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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